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Detailed information on CNT3075914


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676392Brassica junceaSetaria viridis12.2120.1187.8474forward
CNT30702712Brassica junceaQuercus lobata20.1314.5885.25122forward
CNT30377016Brassica junceaArabidopsis thaliana21.6235.9993.13131forward
CNT30380779Brassica junceaManihot esculenta44.3943.1881.04269forward
CNT30710572Brassica junceaGlycine max20.6327.9683.2125forward
CNT30237267Brassica junceaBrassica oleracea99.8374.695.37605forward
CNT30439071Brassica junceaAegilops tauschii12.8723.3591.0378forward
CNT30255936Brassica junceaAvena sativa12.8721.289.7478forward
CNT30263633Brassica junceaBrassica rapa96.5397.8391.79585forward
CNT30462400Brassica junceaSaccharum spontaneum36.6316.3180.18222forward
CNT30610790Brassica junceaGossypium raimondii18.6536.9388.5113forward
CNT30217689Brassica junceaKalanchoe fedtschenkoi11.2222.6788.2468forward
CNT30345067Brassica junceaEragrostis tef14.5226.2785.2388forward
CNT30477126Brassica junceaArabidopsis halleri49.6774.587.04301forward
CNT30365786Brassica junceaSorghum bicolor27.2363.7181.21165forward
CNT30620107Brassica junceaCajanus cajan23.610.2983.22143forward
CNT30570331Brassica junceaVitis vinifera37.4638.4786.34227forward

Expression of CNT3075914

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MFSGKCSEEHVRRRRTRATGLVPGSSRSGVALSLDSAPGVTMLGFRRIPSNMTLF*

Sequence

>CNT3075914
AAATGATCAAAGATAGTAGATAACTTCAATATATTAAAAACTTATTAAAAGGAGTAGCTAATGCAAATTCAGCAGAGAAAATAAGTGATTTGACATGATA
ATAACAACCATACTCGAAAACAAATGTAATTAAAACACTTGCTTCATCTCCTTTCACAGCATCTTCACCTCTTCAACATTGTTGTCTTCAGTAGGTGTAG
CCTTTGACGAACATACCCTCCTTAGCCTCTTCAGACTCACCTTCTCCGGTGTATTTTCCGAGCTGAGCCAACGAATTGGCCTTGGCTCGAGTCAAGAGAG
TGGTCTGAGCTGCGTTCACGTTCTCAGCTCTGCCTCCCCATGTTTTCAGGCAAGTGTTCTGAAGAGCACGTGCGTAGGAGAAGGACACGTGCCACGGGTT
TGGTGCCTGGTTCATCGCGTTCAGGAGTAGCTCTGTCTTTAGACTCGGCTCCTGGAGTCACCATGCTCGGCTTCAGGAGGATACCTTCAAACATGACATT
GTTCTGAGCAAGGTAAAAGAAAACCTCAGCCCACACCTTCTCAGCTACTTCGTAAGTCCTGTCAATGTCGTGTTCTCCGTCCAACAATATCTCTGGCTCC
ACTATG