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Detailed information on CNT30348317


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SJQ9|ALFC6_ARATH, E-value = 5e-25

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223084Eragrostis tefHordeum vulgare22.519.3689.4151forward
CNT30237226Eragrostis tefBrassica oleracea15.6523.1887.62105forward
CNT30255936Eragrostis tefAvena sativa22.9541.8588.96154forward
CNT307142Eragrostis tefZea mays22.9512.394.16154forward

Expression of CNT30348317

Peptides detected in this lncRNA

>peptide 1 (46 aa)
SEALIIKYNIRFACILRCKICSNQIHISHRHLSTQVCPVKYRWQTR*

>peptide 2 (33 aa)
MTRCWSQRVAQDPEMSTKSEIYISIWISAMQVLC

Sequence

>CNT30348317
CTCCGAAGCTCTGATCATAAAATATAATATTCGATTCGCATGCATATTAAGATGCAAAATTTGCAGTAACCAAATCCACATTTCACATAGACATTTGTCT
ACTCAAGTTTGTCCCGTAAAATACAGATGGCAGACAAGGTAACAAGGCTCTAGAAATCATGTGAATGCAGTAAAATTCCAAGTTTCCCACTTAGTAGGGT
GGTAAAAACGCAGTGTATTTTGTCCATCTGAACATGTAACTGCCTACAGTGCCCTCAAGGTGCTAGCAGTGTACGGTATCATCTTAGTAGCTGTAGTTCT
TGACGAACATGTCCTCCTTGGCCGCCTCAGCCTCACCGTCGCTAGTGTACTTGCCGAGCTGAGCCAGGGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTC
CTGCGCCGCCTTGAAGTTCTCGGGCCGGCCGCCCCATGTCTTGAGGCAGGTGTTCTGGAGAGCCCTGGCGTAGGAGAAGGACACATGCCACGGGTTGGTG
CCCTGGTTCATGGCGTTCAGGTTCTGGGTGGCCTCCACCTCAGACTGGCCATCAAGACCCTGACACCATGACTCGTTGTTGGAGCCAGCGAGTGGCACAA
GACCCTGAAATGAGCACGAAGTCAGAGATTTATATATCCATTTGGATTTCAGCTATGCAAGTGCTTTGTCA