Detailed information on CNT307142


BLAST search results

BLAST vs Swiss-Prot:
sp|Q40677|ALFP_ORYSJ, E-value = 3e-29

BLAST vs NONCODE:
NONZMAT001190, E-value = 3e-59

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639585Zea maysNymphaea colorata7.9941.6784100forward
CNT30381342Zea maysManihot esculenta13.520.9281.07169forward
CNT30708916Zea maysGlycine max10.2253.1182.03128forward
CNT30237226Zea maysBrassica oleracea9.0324.9484.96113forward
CNT30439071Zea maysAegilops tauschii16.4561.6886.41206forward
CNT30255936Zea maysAvena sativa10.4635.688.55131forward
CNT30664005Zea maysTriticum dicoccoides16.6146.7485.1208forward
CNT30261343Zea maysBrassica rapa11.9828.3682150forward
CNT30217689Zea maysKalanchoe fedtschenkoi7.673290.6296forward
CNT30684371Zea maysTriticum urartu6.6322.6293.9883forward
CNT30348317Zea maysEragrostis tef12.322.9594.16154forward
CNT30479625Zea maysArabidopsis halleri7.9129.9182.8399forward
CNT30365786Zea maysSorghum bicolor9.8247.4992.68123forward
CNT30481517Zea maysChara braunii8.9537.0983.04112forward
CNT30570222Zea maysVitis vinifera12.6231.6684.18158forward
CNT30104100Zea maysOryza rufipogon16.6938.2890.43209forward
CNT30334895Zea maysCynara cardunculus8.0724.8286.14101forward

Expression of CNT307142

Peptides detected in this lncRNA

>peptide 1 (44 aa)
TYTFILKEVIPAEGKYHDTSSTLAMPEFRILTEVCRLSLRRDSY*

>peptide 2 (40 aa)
MMPKSSDPFHVFTQGSSKICSSVCFPAETCNGTAPDRGTY*

>peptide 3 (70 aa)
MPSFAAAASPSPRVLRRLDVLGPAAPRLEAGVLQRPGVGEGHVPRVGALVHGVQVLGRLHLRLPAGQELHA

>peptide 4 (85 aa)
MLFSLVVCLIKPLVKITFVLAGWLRKPSVKITFPLVGLLRKPPVQMLFSLSVLKQTPVKKDGFKTNAGEKGRFSLALSRHKKTLV*

>peptide 5 (48 aa)
MFSLRVAVKFAVVYVFQLKPVTAPPPIEERTSSRSGVSPSSLISSCSS*

Sequence

>CNT307142
GACCTATACATTCATATTGAAAGAGGTCATTCCCGCTGAAGGAAAATATCACGATACTTCCAGTACATTAGCTATGCCAGAGTTTAGAATACTAACAGAA
GTTTGTAGACTATCTCTTAGACGAGATAGTTATTAGAGCATAGGTGAAAACTTTTGATGTATATATAGAATATGTGAAGCATATATGGTTGTAAACAGAA
GAATTTGATGTATAGAATGTATGATAGAATTTAATTCCATGTTGCTTTCAATATGTGTGCGTGTGTGTAAATAAATATAAAATTCAGTTTTGTTTAAAAA
TTTGAAAATGGGCGGGAAAACTTATCTTGGCGGGAAATGTTAAGAAAACCGCCAGTGCAAATAACATTTTCACAGACGGTTTTATTAAGCAAACCGCCGT
GAAAATAACATTTGCACTGGCGGTTTGCTTAATACAGCCGCCATTGGAAATAACACATTTCCACTGGCGGCTGTATTAAGCAAACCGTCATTTCCACTGG
CGGCTGTATTAAGCAAACCGCCAGTGCAAATGTTATTTTCACTGGTGGTTTGCTTAATAAAACCGTTAGTAAAAATAACATTTGTACTGGCGGGTTGGTT
AAGAAAACCGTCAGTGAAAATAACATTTCCGCTTGTGGGTCTCTTAAGAAAACCACCAGTACAAATGTTATTTTCACTGTCGGTTTTAAAACAAACGCCG
GTGAAAAAGGATGGTTTTAAAACAAACGCCGGTGAAAAAGGCCGGTTTTCACTTGCGCTTAGTAGGCATAAAAAAACGTTAGTGTAAATAGCTTTAGTAC
CGTCAAGATTCTGTGTACTAGTGAGTATTATCGTGTGTCGACCTCTTCTCTAGAAAAATGATGCCCAAATCCAGTGACCCGTTCCATGTTTTCACTCAGG
GTAGCAGTAAAATTTGCAGTAGTGTATGTTTTCCAGCTGAAACCTGTAACGGCACCGCCCCCGATCGAGGAACGTACTAGCAGCAGGAGTGGTGTATCGC
CGTCGTCTTTAATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCCTTTGCCGCCGCGGCCTCGCCATCGCCGCGCGTCCTGCGCCGCCTTGACGTTCTC
GGGCCTGCCGCCCCACGTCTTGAGGCAGGTGTTCTGCAGCGCCCTGGCGTAGGAGAAGGACACGTGCCACGGGTTGGGGCTCTGGTTCATGGCGTTCAGG
TTCTGGGTCGCCTCCACCTCAGACTGCCCGCCGGACAGGAACTGCATGCACG