Detailed information on CNT30524157


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01516|ALFC1_PEA, E-value = 7e-99

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30381342Setaria italicaManihot esculenta14.8522.480.11181forward
CNT30237226Setaria italicaBrassica oleracea9.2724.9485.84113forward
CNT30439071Setaria italicaAegilops tauschii10.6638.9292.31130forward
CNT30255936Setaria italicaAvena sativa12.6341.8590.91154forward
CNT30662744Setaria italicaTriticum dicoccoides21.9950.1991.04268forward
CNT30261343Setaria italicaBrassica rapa9.5221.9382.76116forward
CNT30462400Setaria italicaSaccharum spontaneum22.9720.5789.29280forward
CNT30338292Setaria italicaEragrostis tef25.7698.1294.27314forward
CNT30104026Setaria italicaOryza rufipogon19.7727.2993.36241forward
CNT30595262Setaria italicaEragrostis curvula20.5934.7695.62251forward
CNT30557232Setaria italicaPanicum hallii19.6135.9497.49239forward

Expression of CNT30524157

Peptides detected in this lncRNA

>peptide 1 (72 aa)
MALRFCVASTSDCPPERNMMPGTEGGMRRWRSFRVYSATCSGVARSLASAPGVTMDGLSRMPSNMTLFSAMA*

>peptide 2 (28 aa)
MLLLSSEVQLSSGWQWPQVHTSEQRMECL

>peptide 3 (29 aa)
EGSFYAHSTIYAKYSIDQLHNLISLIHIV*

>peptide 4 (34 aa)
MPCSPSSRISGSTIGTSPLSCSVDSIPSVLAFIN*

>peptide 5 (54 aa)
MPSLASAASPSEVYLPSCASELALARSSSASCAALTFSGTPPHVLRQVFCSARA*

Sequence

>CNT30524157
GGGAAGGATCATTTTATGCCCATTCAACAATCTATGCAAAATACTCGATCGATCAACTTCATAATTTAATTTCTCTTATACATATAGTATAGCATTACCA
TGCCTCAAGCTTGCATCTCAATGGCGAGCTCGATCTTTGCAGTAGCTAGCAGTAGTAACTAACGGCACGCACAAAGCATCGATGAGCACCATGCATGGAT
CATCACAGCGAAGACGTGCTTAGCTTGCGTAACCAGTATGTATCGTCGGAGTAGCTAGCCGATGAATTAGTAGCTGTAGTTCTTGACGAACATGCCCTCC
TTGGCCTCGGCGGCCTCGCCGTCGGAGGTGTACTTGCCGAGCTGCGCCAGCGAGTTGGCCTTGGCGCGCAGCAGCAGCGCGTCCTGCGCCGCCTTGACGT
TCTCCGGCACGCCGCCCCACGTCTTGAGGCAGGTGTTCTGCAGCGCCCGCGCGTAGGAGAAGGACACGTGCCACGGGTTGGGCCCCTGGTTCATGGCGTT
GAGGTTCTGCGTCGCCTCCACCTCCGACTGCCCGCCGGAGAGGAACATGATGCCGGGGACGGAGGGCGGGATGCGGCGGTGGAGGAGCTTCAGGGTGTAC
TCGGCGACCTGCTCCGGCGTGGCCCGGTCCTTAGCCTCGGCGCCCGGCGTCACCATGGATGGCTTGAGCAGGATGCCCTCGAACATGACGTTGTTCTCCG
CCATGGCGTAGAAGGTCCGCTCGATGCCGTGCTCGCCGTCCAGCAGGATCTCCGGCTCTACGATCGGCACAAGTCCGTTGTCCTGCTCGGTCGATTCCAT
TCCATCGGTGTTAGCTTTTATTAATTAGCTGGATGAACTATCTCCATGGCTAGAAGCAAGCAAGAAGGCGTACCTGCGAGATGGCGGCGTAGCGGGCGAG
CCCCCATGCGGCCTCCTTGACGGCGAGCTCGGATGGCCCGTTGGGGATGCTGACGACGGTGCGCCACTTGGCGAATCGGGCGCCCTGCTGGTAGTAGGCG
CTGGCGCGGACGACCACGGAGACGGTGACCGGCCGGGGCGCGGTGAGCTGCCTGGCGGCGCCCCATTCCGACTTCTTGGGAAGGAAGGAGGACTTGAGCA
GGGTAGCAGAGGCCATCTTCTTCTTCCTCGATGCTCTTGCTGTCTTCTGAAGTTCAGCTCAGCTCAGGCTGGCAGTGGCCTCAGGTTCACACCAGTGAAC
AACGAATGGAGTGTCTCCT