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Detailed information on CNT30252935


BLAST search results

BLAST vs Swiss-Prot:
sp|P04709|ADT1_MAIZE, E-value = 1e-65

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691376Avena sativaOryza sativa47.0533.692.27207forward
CNT30670630Avena sativaSetaria viridis51.8244.192.11228forward
CNT30533522Avena sativaEucalyptus grandis31.5950.3684.17139forward
CNT30618446Avena sativaSesamum indicum74.7713.4382.37329forward
CNT30402838Avena sativaBeta vulgaris24.3212.8893.46107forward
CNT30488016Avena sativaOlea europaea71.3690.7580.25314forward
CNT30161998Avena sativaPistacia vera2511.5388.18110forward
CNT3089948Avena sativaSolanum tuberosum21.8220.7383.3396forward
CNT30225406Avena sativaHordeum vulgare18.8637.990.3683forward
CNT3088236Avena sativaVigna radiata29.7726.8486.26131forward
CNT30539350Avena sativaBrassica napus74.0949.9284.97326forward
CNT30552540Avena sativaOryza glaberrima103.8647.2687.75457forward
CNT30441695Avena sativaAegilops tauschii68.6498.3795.03302forward
CNT30313064Avena sativaCamelina sativa26.3614.8991.38116forward
CNT30140477Avena sativaLolium perenne72.0556.5196.21317forward
CNT30606478Avena sativaGossypium raimondii2551.8990110forward
CNT30216129Avena sativaKalanchoe fedtschenkoi27.7320.3789.34122forward
CNT30647898Avena sativaRosa chinensis23.4115.0888.35103forward
CNT30686082Avena sativaTriticum urartu25.4546.4797.32112forward
CNT30722298Avena sativaTriticum spelta24.5514.0895.37108forward
CNT30355032Avena sativaLactuca sativa49.5526.6581.19218forward
CNT30369687Avena sativaOryza glumipatula47.276592.31208forward
CNT30426981Avena sativaPapaver somniferum21.8224.1889.5896forward
CNT30570934Avena sativaVitis vinifera22.7330.391100forward
CNT30706971Avena sativaPrunus avium23.8611.5390.48105forward
CNT3037332Avena sativaCucumis melo75.6850.6881.98333forward
CNT30150378Avena sativaBrachypodium distachyon22.9519.1389.11101forward
CNT30100415Avena sativaOryza rufipogon34.0920.9892.67150forward
CNT30334024Avena sativaCynara cardunculus20.9127.0692.3992forward
CNT3049292Avena sativaCucumis sativus25.2317.5985.59111forward

Expression of CNT30252935

Peptides detected in this lncRNA

>peptide 1 (49 aa)
ARRMLAPAPLKRDLAPSFFRICWKASNELLYLTASPENHTIQSTDHGRQ*

Sequence

>CNT30252935
GGCACGGAGGATGTTGGCACCAGCACCCTTGAAGAGGGACTTAGCACCCTCCTTCTTCAGGATCTGCTGGAAAGCATCGAATGAGCTCTTGTACTTGACG
GCTTCTCCAGAGAATCATACAATCCAAAGTACAGACCACGGTAGACAATGATTCCAACACAGGAGATGTTGAATCCACGGTAAAGCCCAGCAATACCATC
TGTCTTGAGAGTCTTGCGGTAGACATCAACAAGGCCATTGAATTGCCTCTCACCTCCACCCTTGGATGCCTTCGCGTCATTGGCCAGCCTTGTCCTAGCA
TAGTCAAGGGAGTAAACGAAAAACAGAGAGGAAGCACCAGCAGCACCACCAGAGGCAAGGTTGCCAGCAAACCACTTCCAGTAACCATCTCTGTCCTTCT
TGAAGTTGAACAAGCTCTTGAAGTAATCCTTGAATGCAAA