Detailed information on CNT3088236


BLAST search results

BLAST vs Swiss-Prot:
sp|Q41629|ADT1_WHEAT, E-value = 6e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691376Vigna radiataOryza sativa27.2521.5984.21133forward
CNT30677815Vigna radiataSetaria viridis13.9332.2388.2468forward
CNT30533522Vigna radiataEucalyptus grandis26.4346.7486.82129forward
CNT30488016Vigna radiataOlea europaea27.2538.4483.46133forward
CNT30552540Vigna radiataOryza glaberrima27.2513.7584.21133forward
CNT30441695Vigna radiataAegilops tauschii23.5737.4687.83115forward
CNT30252935Vigna radiataAvena sativa26.8429.7786.26131forward
CNT30140477Vigna radiataLolium perenne26.6423.1786.92130forward
CNT30686082Vigna radiataTriticum urartu15.9832.3792.3178forward
CNT3037332Vigna radiataCucumis melo26.2319.4885.16128forward
CNT30100415Vigna radiataOryza rufipogon27.2518.684.21133forward
CNT30334024Vigna radiataCynara cardunculus26.4337.9482.95129forward

Expression of CNT3088236

Peptides detected in this lncRNA

>peptide 1 (44 aa)
NSKPFFIEVIQMQKGNDITAPDRYCRHYLYLNLHHQNHISFRTR*

>peptide 2 (46 aa)
MFAPAPLKSDFVPSFAIIILNASKELLYFTASPDVIIILLRTVSMG*

>peptide 3 (62 aa)
KIQNRFSSKLFKCKRETTSLLQIVIVVIICILTSTTRTIFLSEHDELKLIITSKHSGTCNST*

>peptide 4 (31 aa)
KFKTVFHRSYSNAKGKRHHCSRSLLSSLSVS*

>peptide 5 (33 aa)
MLPKNSCILQLLQMSSSSFYAPYQWGKRPSQHL*

Sequence

>CNT3088236
AAAATTCAAAACCGTTTTTCATCGAAGTTATTCAAATGCAAAAGGGAAACGACATCACTGCTCCAGATCGTTATTGTCGTCATTATCTGTATCTTAACCT
CCACCACCAGAACCATATTTCTTTCCGAACACGATGAGCTGAAGCTTATCATAACCAGCAAGCACTCCGGCACCTGCAACAGCACGTAATATGTTTGCAC
CGGCACCTTTAAAGAGTGACTTCGTACCCTCTTTTGCGATAATTATCTTGAATGCTTCCAAAGAACTCTTGTATTTTACAGCTTCTCCAGATGTCATCAT
CATCCTTCTACGCACCGTATCAATGGGGTAAGAGGCCAAGCCAGCACCTATAGTGATTCCAAAGTAAAGACCACGGTACACTATGATTCCAACACACGAG
ATGTTGAAACCACGGTAAAGGCCAGCAATACCATCAGATTTGATGGTTTTCCTGTAAACATCAACCAAGCCATTGAACTGCCTCTCAC