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Detailed information on CNT30722298


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691376Triticum speltaOryza sativa22.8228.4191.43175forward
CNT30671299Triticum speltaSetaria viridis22.0356.7191.72169forward
CNT30315326Triticum speltaCorylus avellana15.1227.1781.9116forward
CNT3089948Triticum speltaSolanum tuberosum14.8624.6284.21114forward
CNT30225406Triticum speltaHordeum vulgare12.6544.2991.7597forward
CNT30539350Triticum speltaBrassica napus17.7320.8390.44136forward
CNT30552540Triticum speltaOryza glaberrima25.6820.3790.86197forward
CNT30441637Triticum speltaAegilops tauschii27.5157.8198.58211forward
CNT30252935Triticum speltaAvena sativa14.0824.5595.37108forward
CNT30313064Triticum speltaCamelina sativa24.5124.1382.45188forward
CNT30139143Triticum speltaLolium perenne52.5469.0191.56403forward
CNT30216129Triticum speltaKalanchoe fedtschenkoi16.320.8785.6125forward
CNT30647723Triticum speltaRosa chinensis14.2147.1987.16109forward
CNT30426981Triticum speltaPapaver somniferum15.1229.2289.66116forward
CNT30150378Triticum speltaBrachypodium distachyon49.1571.489.66377forward
CNT30495633Triticum speltaDigitaria exilis16.0423.3886.99123forward
CNT30115985Triticum speltaOryza nivara13.6922.1191.43105forward
CNT30175264Triticum speltaVigna angularis13.5621.3685.58104forward

Expression of CNT30722298

SRR9114152: 1.94 RPKM

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MARRMLAPAPLKRDLAPSFFRICWKASKELLYLTASPEEINRKVLDTFLLRGCIGKHWRR*

>peptide 2 (40 aa)
DVDTNSINLTIISVGLEDNVFKENCPVTIQGTYSNSNSTL*

>peptide 3 (34 aa)
MIVNVLRTLPPTYDNLWSSMPPPKTNVGKIHPLQ*

>peptide 4 (30 aa)
MLRARTPSEKLEARWNCPPNFCMTDGWLARS

Sequence

>CNT30722298
AGGATGTTGACACCAATAGCATAAACTTGACCATAATATCAGTCGGATTGGAGGACAATGTATTTAAGGAAAATTGCCCGGTAACGATTCAGGGCACATA
CTCGAACTCAAACTCAACCCTATGATAGTAAATGTTTTGAGAACGCTGCCGCCAACCTACGACAACCTCTGGAGTTCGATGCCTCCACCAAAAACGAATG
TTGGGAAAATCCACCCTCTACAATAATTATTGCCTTCCAACGTTAAAAAGATAAAAGTTCACCAGATCCTCGAAGGGTAGGACTGGGAACAAACTTCTCT
TGTTCGTCATCATTTCGTCCCCTCTAGGCACCGCCTGAGCCGTACTTCTTGCCGAAGAAGAGGATCTGGAGCTGATCATAGCCGGAGAGCACACCAGCAC
CAGCAATGGCACGGAGGATGTTGGCACCAGCCCCCTTGAAGAGGGACTTGGCACCCTCCTTCTTCAGGATCTGCTGGAAAGCATCCAAGGAGCTCTTGTA
CTTGACGGCCTCTCCGGAGGAAATCAATCGCAAAGTTCTTGACACCTTTCTTCTCAGGGGGTGCATTGGCAAACATTGGAGAAGATGACATGATTGGGAC
ACTGATGCCAAGGTTCTGAGTCATGTAGCTGCTTGTGGTGAAGCGCCTCTCATAGGATGGCACAGAAGGGCAGATGTTGCGAGCACGAACACCCTCAGAG
AAGCTGGAGGCAAGGTGGAACTGTCCACCAAACTTCTGCATGACAGACGGGTGGTTAGCTCGGTCCG