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Detailed information on CNT30334024


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691376Cynara cardunculusOryza sativa34.1218.8388.79116forward
CNT30670630Cynara cardunculusSetaria viridis32.3521.2886.36110forward
CNT30533522Cynara cardunculusEucalyptus grandis57.6571.0182.65196forward
CNT30375890Cynara cardunculusArabidopsis thaliana26.1822.8288.7689forward
CNT30618446Cynara cardunculusSesamum indicum35.884.9887.7122forward
CNT30402838Cynara cardunculusBeta vulgaris35.2914.4488.33120forward
CNT30488016Cynara cardunculusOlea europaea53.5352.683.52182forward
CNT30162020Cynara cardunculusPistacia vera60.2994.0486.83205forward
CNT3088236Cynara cardunculusVigna radiata37.9426.4382.95129forward
CNT30539350Cynara cardunculusBrassica napus32.9417.1591.07112forward
CNT30552540Cynara cardunculusOryza glaberrima32.3511.3890110forward
CNT30441695Cynara cardunculusAegilops tauschii34.7138.4487.29118forward
CNT30252935Cynara cardunculusAvena sativa27.0620.9192.3992forward
CNT30313064Cynara cardunculusCamelina sativa28.8212.5886.7398forward
CNT30140477Cynara cardunculusLolium perenne33.5320.3288.6114forward
CNT30606478Cynara cardunculusGossypium raimondii35.8857.5592.62122forward
CNT30216129Cynara cardunculusKalanchoe fedtschenkoi52.6529.8884.36179forward
CNT30686082Cynara cardunculusTriticum urartu34.1248.1390.52116forward
CNT30355032Cynara cardunculusLactuca sativa33.5313.9488.6114forward
CNT30369687Cynara cardunculusOryza glumipatula27.3529.0690.3293forward
CNT30432300Cynara cardunculusPapaver somniferum24.1235.9685.3782reverse complement
CNT30572637Cynara cardunculusVitis vinifera31.1851.9692.45106forward
CNT3037332Cynara cardunculusCucumis melo54.7128.3185.48186forward
CNT30329515Cynara cardunculusDioscorea rotundata23.2410.3489.8779forward
CNT30100415Cynara cardunculusOryza rufipogon34.1216.2288.79116forward

Expression of CNT30334024

Peptides detected in this lncRNA

>peptide 1 (34 aa)
CIFPVRTTGFKESYNPKYKPRYTMIPTHEMLNPR*

Sequence

>CNT30334024
CCTGCATCTTTCCAGTAAGGACAACGGGCTTCAAAGAATCATACAATCCAAAGTACAAACCACGATATACGATGATTCCAACACATGAAATGTTAAATCC
ACGGTAAAGCCCAGCAATACCATCTGATGCTAGTGTCTTCTTGTAGACATCAACCAAACCGTTAAACTGCCTCTCTCCTCCCTTCTTTGCAGCCTTAGAA
TCATTTGCCAAACGGAGGAAGCACCAGCTGCACCTCCAGACCCCAAGTTTCCAGCAAACCATTTCCAGTAGCCATCTCTGTCCTTTTTGAAGTTGAAAAG
CCTCTTGAAGTAATCCTTGAATGCAAAGTTCAGGGCCTGG