Detailed information on CNT3049292


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000078, E-value = 7e-74

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30315326Cucumis sativusCorylus avellana36.4553.8683.48230forward
CNT30375890Cucumis sativusArabidopsis thaliana15.0624.3688.4295forward
CNT30618446Cucumis sativusSesamum indicum45.9611.8486.9290forward
CNT30161998Cucumis sativusPistacia vera45.4830.0888.5287forward
CNT3089948Cucumis sativusSolanum tuberosum26.3135.8581.93166forward
CNT30225406Cucumis sativusHordeum vulgare13.1537.985.5483forward
CNT3085275Cucumis sativusVigna radiata41.0541.9185.33259forward
CNT30252935Cucumis sativusAvena sativa17.5925.2385.59111forward
CNT30313064Cucumis sativusCamelina sativa38.6731.3287.3244forward
CNT30140477Cucumis sativusLolium perenne30.2734.0583.77191forward
CNT30216129Cucumis sativusKalanchoe fedtschenkoi35.9737.986.34227forward
CNT30647898Cucumis sativusRosa chinensis45.4842.0286.76287forward
CNT30623304Cucumis sativusDaucus carota47.0727.2284.85297forward
CNT30354966Cucumis sativusLactuca sativa16.4828.4287.5104forward
CNT30426981Cucumis sativusPapaver somniferum18.3829.2282.76116forward
CNT30570934Cucumis sativusVitis vinifera14.7428.1886.0293forward
CNT30706971Cucumis sativusPrunus avium45.9631.8388.62290forward
CNT3037416Cucumis sativusCucumis melo60.3857.4795.54381forward
CNT30175264Cucumis sativusVigna angularis17.4322.5984.55110forward
CNT30725405Cucumis sativusLupinus angustifolius13.1524.3491.5783forward

Expression of CNT3049292

Peptides detected in this lncRNA

>peptide 1 (35 aa)
FNTNTNEHPELQVIESLNCVNKHNTIQSKLPEKLF*

>peptide 2 (32 aa)
MRHQIRISSRRRSPATYRNRQAHQHQQRHGEC*

Sequence

>CNT3049292
TTTTAATACAAACACAAATGAGCATCCTGAGTTGCAAGTAATTGAAAGTTTAAATTGCGTAAATAAACATAATACAATTCAATCAAAATTACCCGAGAAG
TTATTTTGAGATTCTAAAGGGGGTTCAATGTGAAACACATCTAAAAACTCTGCATCTCAGTCCAAAACTAAATTATATCCTTTAAAATGATAATTAATGT
TCGGGAATTACTCCCTTCAAAACTAAATTATTGAAGGAAAAAAAATCGCCAGAACCAAGTCTAAAACTCTGGAGACATTTTCATCAACATCTGAAAAATG
AATTAACCTTTGCGGTGAGGTTAACTACCTCAGCTTATGCGCCACCAGATCCGTATTTCTTCCCGAAGACGATCACCTGCAACTTATCGTAACCGGCAAG
CACACCAGCACCAGCAACGGCACGGAGAATGTTAGCACCAGCACCCTTGAAGAGAGACTTGGCACCTTCGTTCTTCAAGATCTGAGAGAAGGCATCCATT
GAGCTCTTGTACTTCACTGCTTCACCAGACGTCATCATCATTCTTCTACGAACAGTGTCAATTGGGTAGGATGCGAGACCGGCACCATTGGTGATGAGCC
AACCAAGGGCAAAGCTAGCGAAGAAACTATC