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Detailed information on CNT30150378


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691376Brachypodium distachyonOryza sativa20.8317.8690.91110forward
CNT30671131Brachypodium distachyonSetaria viridis46.0239.0783.54243forward
CNT30375890Brachypodium distachyonArabidopsis thaliana21.428.9783.19113forward
CNT30402838Brachypodium distachyonBeta vulgaris34.2821.7885.64181forward
CNT3089948Brachypodium distachyonSolanum tuberosum20.6423.5482.57109forward
CNT30552540Brachypodium distachyonOryza glaberrima25.5713.9688.15135forward
CNT30441695Brachypodium distachyonAegilops tauschii19.1332.990.1101forward
CNT30252935Brachypodium distachyonAvena sativa19.1322.9589.11101forward
CNT30139143Brachypodium distachyonLolium perenne72.3565.4191.62382forward
CNT30606478Brachypodium distachyonGossypium raimondii19.3248.1185.29102forward
CNT30686082Brachypodium distachyonTriticum urartu18.5640.6689.898forward
CNT30722298Brachypodium distachyonTriticum spelta71.449.1589.66377forward
CNT30369687Brachypodium distachyonOryza glumipatula19.1331.5689.11101forward
CNT30570934Brachypodium distachyonVitis vinifera18.5629.789.898forward
CNT30706971Brachypodium distachyonPrunus avium20.6411.9684.4109forward
CNT30495633Brachypodium distachyonDigitaria exilis39.7739.9281.43210forward
CNT30115985Brachypodium distachyonOryza nivara23.6726.3288125forward

Expression of CNT30150378

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MYGRKIARLRFRAHTRTQPYDSKCLETDAANLRQLLEFDTSTKNECWENPPSTEIIAFQR*

>peptide 2 (91 aa)
YYHMFKFPAKDMTINRTHSIREQCMEGKLPDYDSGHILELNPMIVNVWRLMPQTYDNFWSSIPPPKTNVGKIHPLQKLLPFNVKKIKFARS*

Sequence

>CNT30150378
TTACTATCATATGTTTAAGTTCCCAGCAAAAGATATGACAATAAACCGGACTCATTCAATTCGAGAACAATGTATGGAAGGAAAATTGCCCGATTACGAT
TCAGGGCACATACTCGAACTCAACCCTATGATAGTAAATGTTTGGAGACTGATGCCGCAAACCTACGACAACTTTTGGAGTTCGATACCTCCACCAAAAA
CGAATGTTGGGAAAATCCACCCTCTACAGAAATTATTGCCTTTCAACGTTAAAAAGATAAAGTTCGCCAGATCCTGAAAGGGCAGGACTGGGAACACAGT
ACTCTTGTTCGTCATCATTTCACCCCCTTTAGGCACCGCCTGAGCCATACTTCTTCCCGAAGAAGATGATCTGGAGCTGGTCATAGCCAGAGAGCACACC
AGCGCCAGCAATGGCACGGAGGATGTTAGCACCAGCAGCACCACCAGAAGCAAGGTTACCAGCAAACCACTTTCCATAACCATCCTTTTCCTTCTTAAAG
TTGAACATTCTCTTGAAGTAATCCTTGA