Detailed information on CNT30670630


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691376Setaria viridisOryza sativa42.7535.8888.69221forward
CNT30533522Setaria viridisEucalyptus grandis29.0154.3585.33150forward
CNT30162020Setaria viridisPistacia vera21.2850.4683.64110forward
CNT30552540Setaria viridisOryza glaberrima50.4826.9989.27261forward
CNT30441695Setaria viridisAegilops tauschii41.5970.0391.16215forward
CNT30252935Setaria viridisAvena sativa44.151.8292.11228forward
CNT30140477Setaria viridisLolium perenne50.2946.3591.15260forward
CNT30686082Setaria viridisTriticum urartu27.4758.9290.14142forward
CNT3037332Setaria viridisCucumis melo26.692183.33138forward
CNT30100415Setaria viridisOryza rufipogon31.1422.5288.2161forward
CNT30334024Setaria viridisCynara cardunculus21.2832.3586.36110forward

Expression of CNT30670630

Peptides detected in this lncRNA

>peptide 1 (34 aa)
WRLPVRTTGLIESYSPKYRPRYTMIPTQEMLNPR*

>peptide 2 (43 aa)
LEIAGKDNWLDRIVQPEVQTTVHNDSNTRDVEPTVKPSNTIGL*

Sequence

>CNT30670630
CCTGGAGATTGCCGGTAAGGACAACTGGCTTGATAGAATCGTACAGCCCGAAGTACAGACCACGGTACACAATGATTCCAACACAAGAGATGTTGAACCC
ACGGTAAAGCCCAGCAATACCATCGGACTTTAGAGTCTTGCGGTAGACATCCACAAGACCATTGAATTGCCTATCACCTCCTCCCTTGGCTGCCTTTGCG
TCATTGGCCAGCCTTGTCCTCGCATAGTCCAGGGAGTACACAAAAAACAGGGAGGACGCACCAGCAGCACCACCAGAGCATTAGCAAAAAGCGGAGAGGA
TGACACCGCTGGGACATTGATGCCACCACTGACAGACATTGAAGGGCCCCAAAGGCTCTGGGTCATGTAGTTCCTTGTGGGAAATCTCCTCTCATAAGAC
GAGACAGAAGGGCAGATGTTACGGGCCCGTACACCTTCTGAGAAGCTGGAGCTCAGGTGGAACTGGCCACCGAGCTTATGAAGGACAGTTGGTTGGTTGA
CCTGGTCCGCCATCACC