Detailed information on CNT30647898


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000078, E-value = 6e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671299Rosa chinensisSetaria viridis28.9966.4485.35198forward
CNT30315326Rosa chinensisCorylus avellana33.6753.8682.61230forward
CNT30375890Rosa chinensisArabidopsis thaliana12.4521.7984.7185forward
CNT30618446Rosa chinensisSesamum indicum38.5110.7487.07263forward
CNT30161998Rosa chinensisPistacia vera42.0230.0888.15287forward
CNT3085275Rosa chinensisVigna radiata37.0440.9484.98253forward
CNT30539350Rosa chinensisBrassica napus28.5529.8685.64195forward
CNT30552540Rosa chinensisOryza glaberrima20.6414.5885.82141forward
CNT30252935Rosa chinensisAvena sativa15.0823.4188.35103forward
CNT30313064Rosa chinensisCamelina sativa33.9729.7884.91232forward
CNT30140477Rosa chinensisLolium perenne27.9634.0584.82191forward
CNT30216129Rosa chinensisKalanchoe fedtschenkoi34.2639.0785.04234forward
CNT30623304Rosa chinensisDaucus carota37.1923.2883.86254forward
CNT30426981Rosa chinensisPapaver somniferum19.3333.2585.61132forward
CNT30706971Rosa chinensisPrunus avium40.1230.0890.88274forward
CNT3037416Rosa chinensisCucumis melo37.0438.1687.35253forward
CNT30175264Rosa chinensisVigna angularis19.1826.983.97131forward
CNT30725405Rosa chinensisLupinus angustifolius10.120.2386.9669forward
CNT3049292Rosa chinensisCucumis sativus42.0245.4886.76287forward

Expression of CNT30647898

Peptides detected in this lncRNA

>peptide 1 (37 aa)
GPSFQNNHNENKHTNPLQSNCSRETLQCSLNQNAILL*

>peptide 2 (29 aa)
GLLFRITIMKTSTRILCKAIVPEKHCNAP*

>peptide 3 (50 aa)
MPRRMFAPAPLNRDLAPSFFKICAKASKELLYLTASPEVIIILLRTVSIG*

Sequence

>CNT30647898
GGGCCTTCTTTTCAGAATAACCATAATGAAAACAAGCACACGAATCCTTTGCAAAGCAATTGTTCCAGAGAAACATTGCAATGCTCCTTAAATCAAAATG
CAATACTACTCTAGTAGTTCCAGAAAACAACTTTAGAAAAAGAATTGACATTTAACAATTGAAACACACAAAATAACCTGCATATCATCTGACTAAAATT
CCAAATATGTGTGAAATTTACACCACATTGTAAAAATCTGTTTGGGAACAACTCCCCTATAACTGAATTATTCAAGGAAAATTTTGCCGAAATAAGTACT
TCAGACTAAAAAAAAAAAAAAAAAAAAAGGAAGAGATTTTCATCATCATCATCTAAAAGCTATCTGGCTTGGGAGAGGAGACATTCTTAACCAGATCCAG
AACCGTAACTCTTCCCGAACACAATCAGCTGCAACTTGTCATAACCAGAAAGGACACCAGCACCAGCAATGCCACGGAGGATGTTTGCACCAGCACCCTT
GAACAGGGACTTGGCACCCTCATTCTTCAAGATCTGCGCAAAGGCATCAAAAGAACTCTTGTACTTGACGGCTTCACCGGAGGTCATCATCATTCTTCTA
CGAACAGTGTCAATTGGGTAGGAAGCAAGACCAGCACCATTAGTGATGACCCATCCAAGAGCAAAGCTAGCAAAGAAACTATC