« Back to Gossypium raimondii search


Detailed information on CNT30606478


BLAST search results

BLAST vs Swiss-Prot:
sp|P31167|ADT1_ARATH, E-value = 9e-25

BLAST vs NONCODE:
NONPOPT002032, E-value = 2e-62

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671274Gossypium raimondiiSetaria viridis23.116.691.8449forward
CNT30375890Gossypium raimondiiArabidopsis thaliana41.9822.8291.0189forward
CNT30618446Gossypium raimondiiSesamum indicum80.196.9490170forward
CNT30402838Gossypium raimondiiBeta vulgaris56.1314.3292.44119forward
CNT30488016Gossypium raimondiiOlea europaea63.2138.7388.06134forward
CNT30162005Gossypium raimondiiPistacia vera66.0411.6886.43140forward
CNT3085275Gossypium raimondiiVigna radiata23.117.9391.8449forward
CNT30539350Gossypium raimondiiBrassica napus66.9821.7590.14142forward
CNT30552540Gossypium raimondiiOryza glaberrima57.0812.5190.08121forward
CNT30441695Gossypium raimondiiAegilops tauschii54.2537.4688.7115forward
CNT30252935Gossypium raimondiiAvena sativa51.892590110forward
CNT30313064Gossypium raimondiiCamelina sativa23.116.2993.8849forward
CNT30140477Gossypium raimondiiLolium perenne52.3619.7991.89111forward
CNT30216129Gossypium raimondiiKalanchoe fedtschenkoi50.4717.8689.72107forward
CNT30647723Gossypium raimondiiRosa chinensis23.1121.2195.9249forward
CNT30686082Gossypium raimondiiTriticum urartu47.1741.4987100forward
CNT30355032Gossypium raimondiiLactuca sativa61.7916.0187.02131forward
CNT30369687Gossypium raimondiiOryza glumipatula57.0837.8190.08121forward
CNT30432300Gossypium raimondiiPapaver somniferum40.5737.7286.0586reverse complement
CNT30572637Gossypium raimondiiVitis vinifera91.5195.190.72194forward
CNT30706971Gossypium raimondiiPrunus avium23.115.3893.8849forward
CNT3037332Gossypium raimondiiCucumis melo67.4521.7790.91143forward
CNT30329515Gossypium raimondiiDioscorea rotundata56.1315.5888.24119forward
CNT30150378Gossypium raimondiiBrachypodium distachyon48.1119.3285.29102forward
CNT30115985Gossypium raimondiiOryza nivara31.614.1194.0367forward
CNT30334024Gossypium raimondiiCynara cardunculus57.5535.8892.62122forward
CNT3049150Gossypium raimondiiCucumis sativus23.116.7797.9649forward

Expression of CNT30606478

Peptides detected in this lncRNA

>peptide 1 (53 aa)
SSSFFYEQCQLGKMQDEFEHNPRSRQREGKKHQLHHQMPSSQQTISSNHLCLS*

>peptide 2 (69 aa)
HHHSSTNSVNWVRCKTSSSIIQGVDKEKGRSTSCTTRCQVPSKPFPVTISVFLEVEKPLEVILEGKVQGL

Sequence

>CNT30606478
GTCATCATCATTCTTCTACGAACAGTGTCAATTGGGTAAGATGCAAGACGAGTTCGAGCATAATCCAAGGAGTAGACAAAGAGAAGGGAAGAAGCACCAG
CTGCACCACCAGATGCCAAGTTCCCAGCAAACCATTTCCAGTAACCATCTCTGTCTTTCTTGAAGTTGAAAAGCCTCTTGAAGTAATCCTTGAAGGCAAA
GTTCAAGGCCTG