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Detailed information on CNT30706971


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000078, E-value = 6e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671299Prunus aviumSetaria viridis21.6266.1189.34197forward
CNT30315326Prunus aviumCorylus avellana26.3456.2185240forward
CNT30375890Prunus aviumArabidopsis thaliana11.9627.9583.49109forward
CNT30618446Prunus aviumSesamum indicum32.3812.0587.8295forward
CNT30161998Prunus aviumPistacia vera25.5824.4289.27233forward
CNT3089948Prunus aviumSolanum tuberosum19.7638.8883.33180forward
CNT30225406Prunus aviumHordeum vulgare10.6544.2988.6697forward
CNT3085275Prunus aviumVigna radiata28.7642.3985.88262forward
CNT30539350Prunus aviumBrassica napus20.3128.3388.65185forward
CNT30252935Prunus aviumAvena sativa11.5323.8690.48105forward
CNT30313064Prunus aviumCamelina sativa28.3233.1284.88258forward
CNT30140477Prunus aviumLolium perenne21.4134.7688.21195forward
CNT30606478Prunus aviumGossypium raimondii5.3823.1193.8849forward
CNT30216129Prunus aviumKalanchoe fedtschenkoi26.2339.986.61239forward
CNT30647898Prunus aviumRosa chinensis30.0840.1290.88274forward
CNT30623304Prunus aviumDaucus carota32.4927.1383.11296forward
CNT30426981Prunus aviumPapaver somniferum15.9236.5286.21145forward
CNT30570934Prunus aviumVitis vinifera11.7532.4288.79107forward
CNT3037416Prunus aviumCucumis melo28.8739.6788.21263forward
CNT30150378Prunus aviumBrachypodium distachyon11.9620.6484.4109forward
CNT30175264Prunus aviumVigna angularis15.0428.1383.21137forward
CNT3049292Prunus aviumCucumis sativus31.8345.9688.62290forward

Expression of CNT30706971

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MARRMLAPAPLKRDLAPSFFRICLKASRELLYLTASPEVIIILLRTVSIG*

>peptide 2 (44 aa)
MQTKYMIITQKATKNIIIHATSHVGKCNPTIRPYNHEPRGYESE*

>peptide 3 (30 aa)
MNQEVMNQSSPLTCKPPVRTTGFNESYNPK*

>peptide 4 (41 aa)
NYILRHHQIHTSSRTQPAVAYHNQKGHQHQQWHGGCWHQHP*

Sequence

>CNT30706971
GAACTACATTCTTAGGCACCACCAGATCCATACTTCTTCCCGAACACAACCAGCTGTAGCTTATCATAACCAGAAAGGACACCAGCACCAGCAATGGCAC
GGAGGATGTTGGCACCAGCACCCTTAAAGAGAGACTTGGCACCCTCATTCTTCAGGATCTGCTTGAAGGCATCCAGGGAGCTCTTGTACTTGACAGCTTC
ACCGGAGGTCATCATCATTCTTCTGCGAACAGTGTCAATTGGGTAGGAAGCAAGACCAGCACCATTGGTGATGAGCCAACCAAGGGCAAAGCTGGCGAAG
AAACTATCCTGTAGTTTTTAAAACAAACAAAAAAGCAAAACGTCAAAAAGTTGAAAGCAAAAGGTTTTACATGCATATTGCAGTTCATAAGGTCAATAAA
GCCAATTCAAACAATAATAGGGAAACACAACTTATCCTTGACTCAATTAATTGAAAATAAACAAGGGCTAAGGTCAACAAATTGCACCATTGTGACATAT
GATCCTTTAAGAAACAACAAAACAATAAATGCTTTATAGGACTATTTCTAATGCTTCACAACTGACACTAAGTAAAACAAGGGGAAGCCAAAAATAACAA
GCAGAACAATTGACAAATCATACAGCAATATGCCAAAAGACTTATAATTTTGAGAAAGTAAAATAATGACTAATATAAGAAAAATTGTGCCATAAGTATG
CAGACAAAATATATGATAATTACGCAGAAAGCAACGAAAAATATCATAATTCATGCAACAAGCCACGTTGGTAAATGCAACCCTACTATAAGACCATATA
ACCATGAACCAAGAGGTTATGAATCAGAGTAGTCCACTAACCTGCAAACCTCCAGTCAGGACCACAGGCTTCAATGAATCATACAATCCAAAGTAGAGAC
CACGGTACACA