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Detailed information on CNT30216129


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONPOPT000078, E-value = 3e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691376Kalanchoe fedtschenkoiOryza sativa21.220.6288.19127forward
CNT30671299Kalanchoe fedtschenkoiSetaria viridis33.5667.4586.57201forward
CNT30533522Kalanchoe fedtschenkoiEucalyptus grandis30.2265.5882.87181forward
CNT30315326Kalanchoe fedtschenkoiCorylus avellana31.5544.2687.83189forward
CNT30618446Kalanchoe fedtschenkoiSesamum indicum49.9212.2184.28299forward
CNT30488016Kalanchoe fedtschenkoiOlea europaea45.9179.4882.55275forward
CNT30161998Kalanchoe fedtschenkoiPistacia vera39.0724.5385.04234forward
CNT3089948Kalanchoe fedtschenkoiSolanum tuberosum28.8837.3786.13173forward
CNT3085275Kalanchoe fedtschenkoiVigna radiata35.0633.9884.76210forward
CNT30539350Kalanchoe fedtschenkoiBrassica napus50.5846.481.85303forward
CNT30552540Kalanchoe fedtschenkoiOryza glaberrima48.2529.8980.97289forward
CNT30441695Kalanchoe fedtschenkoiAegilops tauschii15.1929.6490.1191forward
CNT30252935Kalanchoe fedtschenkoiAvena sativa20.3727.7389.34122forward
CNT30313064Kalanchoe fedtschenkoiCamelina sativa83.3164.0680.16499forward
CNT30140477Kalanchoe fedtschenkoiLolium perenne31.5533.6986.24189forward
CNT30606478Kalanchoe fedtschenkoiGossypium raimondii17.8650.4789.72107forward
CNT30647898Kalanchoe fedtschenkoiRosa chinensis39.0734.2685.04234forward
CNT30623304Kalanchoe fedtschenkoiDaucus carota43.4123.8383.46260forward
CNT30686082Kalanchoe fedtschenkoiTriticum urartu19.5348.5590.6117forward
CNT30722298Kalanchoe fedtschenkoiTriticum spelta20.8716.385.6125forward
CNT30355032Kalanchoe fedtschenkoiLactuca sativa24.8718.2285.23149forward
CNT30369687Kalanchoe fedtschenkoiOryza glumipatula13.36259080forward
CNT30426981Kalanchoe fedtschenkoiPapaver somniferum29.7244.8483.71178forward
CNT30570934Kalanchoe fedtschenkoiVitis vinifera26.0447.2786.54156forward
CNT30706971Kalanchoe fedtschenkoiPrunus avium39.926.2386.61239forward
CNT3037416Kalanchoe fedtschenkoiCucumis melo33.8930.6286.7203forward
CNT30100415Kalanchoe fedtschenkoiOryza rufipogon21.217.7688.19127forward
CNT30334024Kalanchoe fedtschenkoiCynara cardunculus29.8852.6584.36179forward
CNT3049292Kalanchoe fedtschenkoiCucumis sativus37.935.9786.34227forward

Expression of CNT30216129

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MSSCTSQPHPRSSSFFFGQCQWGKMQARHHW*

>peptide 2 (59 aa)
ECSGLCSSGTIFLSKNQHLKLVITSKHTSSSNGAEDVGTSTLEERLWTLILKNLRERIK*

>peptide 3 (41 aa)
MFRIMLLRNHISFQEPTPEACHNQQAHQLQQWRGGCWHQHP*

Sequence

>CNT30216129
GTGAATGTTCCGGATTATGCTCCTCCGGAACCATATTTCTTTCCAAGAACCAACACCTGAAGCTTGTCATAACCAGCAAGCACACCAGCTCCAGCAATGG
CGCGGAGGATGTTGGCACCAGCACCCTTGAAGAGAGACTTTGGACCCTCATTCTTAAGAATTTGAGAGAACGCATCAAATGAGCTCTTGTACTTCACAGC
CTCACCCGAGGTCATCATCATTCTTCTTCGGACAGTGTCAATGGGGTAAGATGCAAGCCCGGCACCATTGGTAATAACCCAACCAAGAGCAAAGCTGGCT
TCAGAGAGTCATACATTCCAAAGTAAAGACCACGGTATACTATGATACCAACACAAGAGATGTTGAACCCACGGTATAGCCCAGCAATACCATCTGATTT
CAGTGTCTTGCGGTAGACATCAATCAAACCATCAAACTGTCGGCCTCCTCCCTTCTTTGCAGCCTTGGCATCATTAGCAAGCCGAGTTCTAGCATAATCC
AACGAGTAGACAAACAGCAAAGAAGAGGCACCAGCAGCACCTCCAGATGCCAAGTTACCAGCAAACCATTTCCAGTAACCATCACGGTCCTTCTTAAAG