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Detailed information on CNT30539350


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691376Brassica napusOryza sativa23.7425.1687.1155forward
CNT30671299Brassica napusSetaria viridis28.3362.0888.65185forward
CNT30533522Brassica napusEucalyptus grandis26.0361.5984.12170forward
CNT30315326Brassica napusCorylus avellana25.1138.4184.76164forward
CNT30375890Brassica napusArabidopsis thaliana13.6322.8293.2689forward
CNT30618446Brassica napusSesamum indicum53.614.2984350forward
CNT30488016Brassica napusOlea europaea49.7793.9380.92325forward
CNT30161998Brassica napusPistacia vera33.3822.8584.4218forward
CNT3089948Brassica napusSolanum tuberosum17.4624.6284.21114forward
CNT30225406Brassica napusHordeum vulgare14.8544.2984.5497forward
CNT3085275Brassica napusVigna radiata27.4128.9687.71179forward
CNT30552540Brassica napusOryza glaberrima53.4536.0983.38349forward
CNT30441695Brassica napusAegilops tauschii47.0110085.34307forward
CNT30252935Brassica napusAvena sativa49.9274.0984.97326forward
CNT30313064Brassica napusCamelina sativa40.8934.2786.52267forward
CNT30140477Brassica napusLolium perenne51.9160.4386.14339forward
CNT30606478Brassica napusGossypium raimondii21.7566.9890.14142forward
CNT30216129Brassica napusKalanchoe fedtschenkoi46.450.5881.85303forward
CNT30647898Brassica napusRosa chinensis29.8628.5585.64195forward
CNT30623304Brassica napusDaucus carota32.4719.4383.02212forward
CNT30686082Brassica napusTriticum urartu17.346.8992.04113forward
CNT30722298Brassica napusTriticum spelta20.8317.7390.44136forward
CNT30355032Brassica napusLactuca sativa33.8427.0286.43221forward
CNT30369687Brassica napusOryza glumipatula23.5848.1285.71154forward
CNT30426981Brassica napusPapaver somniferum25.1141.3185.37164forward
CNT30570934Brassica napusVitis vinifera21.943.3390.21143forward
CNT30706971Brassica napusPrunus avium28.3320.3188.65185forward
CNT3037332Brassica napusCucumis melo53.653.2784350forward
CNT30100415Brassica napusOryza rufipogon23.7421.6887.1155forward
CNT30175264Brassica napusVigna angularis15.3120.5388100forward
CNT30334024Brassica napusCynara cardunculus17.1532.9491.07112forward
CNT3049150Brassica napusCucumis sativus27.4124.7287.15179forward
CNT3040169Brassica napusMarchantia polymorpha11.7923.3384.4277forward

Expression of CNT30539350

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MLAPAPLNRDLGPSFFRICWNASMELLYLTASPEVIIILLRTVSIGYDARQGLDVKIRNINKPGGQRGGEASKSHTDQSRDHGRQ*

Sequence

>CNT30539350
CTTAGCCGGATCCAGATCCGTACTTCTTTCCGAGAAGAAGTAACTGGAGCTTGTCGTATCCAGAGAGCACACCAGCACCTGCAATAGCACGGAGGATGTT
GGCACCAGCACCCTTGAACAGAGACTTGGGTCCTTCCTTCTTCAGGATCTGTTGGAATGCATCCATGGAGCTCTTGTACTTGACGGCTTCACCGGAGGTC
ATCATCATTCTTCTACGGACTGTGTCGATTGGGTACGATGCAAGGCAGGGTTTGGATGTCAAAATCAGAAACATAAATAAACCTGGAGGTCAGCGGGGAG
GAGAGGCTTCAAAGAGTCATACAGACCAAAGTAGAGACCACGGTAGACAATGATACCAACACAGGAGATGTTGAATCCACGGTAAAGTCCAGCGATACCA
TCGGACTTGAGAGTCTTCTTGTAGACATCAACAAGACCATTGAACTGCCTTTCACCTCCCTTCTTGGCTGCCTTGGAGTCGTTGGCGAGACGGGTACGTG
CATAGTCAAGAGAGTACACGAAGAGAAGGGAAGATGCACCAGCAGCACCTCCAGATCCCAAGTTACCAGCAAACCACTTCCAGTAACCATCCCTGTCCTT
CTTAAAGTTGAAAAGCCTCTTGAAGTAATCTTTGAACGCAAAGTTCAATGCCT