« Back to Oryza glaberrima search


Detailed information on CNT30552540


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691376Oryza glaberrimaOryza sativa22.8535.88100221forward
CNT30670630Oryza glaberrimaSetaria viridis26.9950.4889.27261forward
CNT30533522Oryza glaberrimaEucalyptus grandis19.2367.3982.8186forward
CNT30315326Oryza glaberrimaCorylus avellana15.4134.8981.21149forward
CNT30618446Oryza glaberrimaSesamum indicum36.0914.2581.95349forward
CNT30488016Oryza glaberrimaOlea europaea32.4790.7584.08314forward
CNT30162020Oryza glaberrimaPistacia vera6.7229.8296.9265forward
CNT3089948Oryza glaberrimaSolanum tuberosum18.6138.8881.67180forward
CNT30225406Oryza glaberrimaHordeum vulgare9.240.6488.7689forward
CNT3088236Oryza glaberrimaVigna radiata13.7527.2584.21133forward
CNT30539350Oryza glaberrimaBrassica napus36.0953.4583.38349forward
CNT30441695Oryza glaberrimaAegilops tauschii31.7510091.86307forward
CNT30252935Oryza glaberrimaAvena sativa47.26103.8687.75457forward
CNT30313064Oryza glaberrimaCamelina sativa19.1323.7585.41185forward
CNT30140477Oryza glaberrimaLolium perenne36.0962.2191.69349forward
CNT30606478Oryza glaberrimaGossypium raimondii12.5157.0890.08121forward
CNT30216129Oryza glaberrimaKalanchoe fedtschenkoi29.8948.2580.97289forward
CNT30647898Oryza glaberrimaRosa chinensis14.5820.6485.82141forward
CNT30686082Oryza glaberrimaTriticum urartu13.1352.793.7127forward
CNT30722298Oryza glaberrimaTriticum spelta20.3725.6890.86197forward
CNT30355032Oryza glaberrimaLactuca sativa22.5426.6581.65218forward
CNT30369687Oryza glaberrimaOryza glumipatula22.6568.4499.54219forward
CNT30426981Oryza glaberrimaPapaver somniferum17.4842.5786.39169forward
CNT30570934Oryza glaberrimaVitis vinifera13.7540.386.47133forward
CNT3037332Oryza glaberrimaCucumis melo36.0953.1283.67349forward
CNT30150378Oryza glaberrimaBrachypodium distachyon13.9625.5788.15135forward
CNT30100415Oryza glaberrimaOryza rufipogon36.549.3799.72353forward
CNT30115985Oryza glaberrimaOryza nivara41.6884.8499.01403forward
CNT30334024Oryza glaberrimaCynara cardunculus11.3832.3590110forward
CNT3040169Oryza glaberrimaMarchantia polymorpha7.8623.0384.2176forward

Expression of CNT30552540

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLKRQNSPDPVSAGPGINTCSSSFSASLGTTRAVLLSKEEDLQLVIA*

>peptide 2 (33 aa)
MKHCKIVTPTKDRNSIIFRYFTEGNVWKENRQT*

>peptide 3 (60 aa)
MARRMLAPAPLNSDLAPSFFRIWEKASMELLYLTASPEDNWLQRIIHSKVQTTVDNDSNT*

>peptide 4 (62 aa)
MYGRKIARHNRAGQTQLKLNPMMVNCLRLTPPPMTMFGDKRFHQKTNVGSVLPYKNYYCFQC*

Sequence

>CNT30552540
GAGCAATAAATTGCATGCATGTAGAGAAACGCAATGCAAAATGCTATCAGGAATATAACAGGATGAAACAGTAGAAATAATGAAGCATTGCAAAATAGTA
ACACCAACAAAAGATAGAAACTCAATAATCTTTCGATATTTCACCGAGGGTAATGTATGGAAGGAAAATCGCCAGACATAACAGAGCCGGCCAGACTCAA
CTCAAACTCAACCCTATGATGGTAAACTGTTTGCGATTAACGCCTCCGCCTATGACAATGTTTGGAGATAAACGCTTCCACCAAAAAACGAATGTCGGGA
GTGTTCTCCCCTACAAGAATTATTATTGTTTTCAATGTTAAAAAGGCAAAATTCACCAGATCCCGTTAGTGCAGGACCAGGAATAAACACTTGTTCGTCA
TCATTTTCTGCCAGTTTAGGCACCACCCGAGCCGTACTTCTTTCCAAAGAAGAGGATCTGCAGCTGGTCATAGCCTGAGAGCACACCAGCACCAGCAATG
GCACGTAGGATGTTGGCACCAGCACCCTTGAACAGTGACTTGGCACCCTCGTTCTTCAGGATCTGGGAGAAAGCATCCATGGAGCTCTTGTACTTGACAG
CCTCTCCAGAGGACAACTGGCTTCAGAGAATCATACATTCCAAAGTACAGACCACGGTAGACAATGATTCCAACACATGAGATGTTAAATCCACGGTACA
ACCCAGCAATGCCATCTGACTTGAGAGTCTTGCGGTAAACATCCACAAGGCCATTGAACTGCCTTTCACCTCCTCCCTTGGCAGCCTTCGCATCATTGGC
CAACCTTGTCCTAGCATAGTCAAGGGAGTACACAAAAAACAGAGATGAAGCACCAGCAGCACCACCAGAGGCAAGGTTGCCACCAAACCACTTCCAGTAA
CCATCCTTGTCTTTCTTGAAGTTGAACAGCCTCTTGAAGTAATCCTTGAAAGCAAAGTTCAAAGCCT