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Detailed information on CNT30580975


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Echinochloa crusgalliOryza sativa82.8578.2696.46198forward
CNT30672141Echinochloa crusgalliSetaria viridis58.1619.66100139forward
CNT30520455Echinochloa crusgalliSetaria italica99.5844.74100238forward
CNT30288773Echinochloa crusgalliTriticum aestivum31.829.0193.4276forward
CNT30221764Echinochloa crusgalliHordeum vulgare56.4947.3793.33135forward
CNT30436586Echinochloa crusgalliAegilops tauschii74.4877.3996.07178forward
CNT30244600Echinochloa crusgalliAvena sativa76.5777.8793.99183forward
CNT30659042Echinochloa crusgalliTriticum dicoccoides77.8263.4895.7186forward
CNT30131664Echinochloa crusgalliLolium perenne101.6710090.95243forward
CNT3013862Echinochloa crusgalliZea mays51.8817.7797.58124forward
CNT30681050Echinochloa crusgalliTriticum urartu97.9110094.44234forward
CNT30370710Echinochloa crusgalliOryza glumipatula51.8831.3995.97124forward

Expression of CNT30580975

Peptides detected in this lncRNA

>peptide 1 (78 aa)
VPDVGAGELVAGEDGLDDEEGGGVGEVLLLAGGVPEGRVEDADLGQELRDEDARRAEHRPPAVHQLRLHVPPQALRVRS

>peptide 2 (78 aa)
GYPTSVPVSLLLGKMGSMMKRVVVSVKYCCSPAVYQKGVLRMPILVRNSGMKMPAAPSIAHRQCTSSACTFHRKLSGSD

Sequence

>CNT30580975
GGGTACCCGACGTCGGTGCCGGTGAGCTTGTTGCTGGGGAAGATGGGCTCGATGATGAAGAGGGTGGTGGTGTCGGTGAAGTACTGCTGCTCGCCGGCGG
TGTACCAGAAGGGCGTGTTGAGGATGCCGATCTTGGTCAGGAACTCCGGGATGAAGATGCCCGCCGCGCCGAGCATCGCCCACCGGCAGTGCACCAGCTC
CGCCTGCACGTTCCACCGCAAGCTCTCCGGGTCAGATCC