Detailed information on CNT30577305


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SQL2|CB24_PEA, E-value = 8e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695524Oryza barthiiOryza sativa100.6671.0697.93916forward
CNT30394114Oryza barthiiTriticum turgidum11.5431.7295.24105forward
CNT30591239Oryza barthiiMusa acuminata11.4337.1488.46104forward
CNT30436586Oryza barthiiAegilops tauschii6.9227.3988.8963forward
CNT30244600Oryza barthiiAvena sativa7.2528.0986.3666forward
CNT30659042Oryza barthiiTriticum dicoccoides7.1422.1889.2365forward
CNT30131664Oryza barthiiLolium perenne7.2527.1687.8866forward
CNT30685421Oryza barthiiTriticum urartu11.8745.3895.37108forward
CNT30102835Oryza barthiiOryza rufipogon100.9986.6297.28919forward
CNT30556637Oryza barthiiPanicum hallii6.8128.3187.162forward

Expression of CNT30577305

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MHPDPCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 2 (37 aa)
MHTPQKKKEETRREHLRSPNHRFHQPELIKLLEMPWP*

>peptide 3 (56 aa)
MMVLCHGSDSSIPATPSIAHRPFTSSACTNHRRFSGSSARPNGSNPLSPGKLYTPV*

>peptide 4 (84 aa)
MHAGNNYHNTHSKSESHHIHISLSPPPNSLTSYTCILHKKKKKKQEENIFDRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 5 (30 aa)
MEDCPRKVDLSDADGRRAATGARAVTDAMA*

Sequence

>CNT30577305
ATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCTAGAACACTGCTGCTACCATGAGA
TAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATCCATGCATGCAGGAAACAATTACCACA
ACACACACAGTAAGTCTGAATCTCATCACATCCATATCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACATGCATACTCCACAAAAAAAAAAA
GAAGAAACAAGAAGAGAACATCTTCGATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGATGCCCTGGCCCTGATGAAATCGAT
CACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGCAGCATCCCGGCCACCCCCAGCATCGCCCACCGCCCGTTCACCAG
CTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCCGCCAGACCCAACGGGTCGAACCCGTTATCGCCTGGCAAGCTGTATACACCCGTTTAACTA
TCATGTTAGTAGTTTCTTATGATGCTCTCTATTGGCAGTAGAAATATATTTTTTTAAGTGTGTGCTCACCTGCCGTTGAGGTAGGTGGGAGAAGGGAGGC
CAGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTACGCCTCGTAGTCGGTGCGCGGGCGAGACGGATGGAGGATTGCCCTAGGAAGGTAGACTTGAG
CGACGCCGACGGGCGGAGGGCTGCGACCGGGGCGCGGGCGGTGACGGACGCCATGGCTTAGCTTCCCCGGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGT
AGTCACAAGG