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Detailed information on CNT30102835

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SQL2|CB24_PEA, E-value = 2e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695524	Oryza rufipogon	Oryza sativa	100.19	82.47	98.49	1063	forward
CNT30554627	Oryza rufipogon	Oryza glaberrima	48.44	46.94	97.67	514	forward
CNT30436586	Oryza rufipogon	Aegilops tauschii	5.94	27.39	88.89	63	forward
CNT30244600	Oryza rufipogon	Avena sativa	6.22	28.09	86.36	66	forward
CNT30659042	Oryza rufipogon	Triticum dicoccoides	6.13	22.18	89.23	65	forward
CNT30131664	Oryza rufipogon	Lolium perenne	6.22	27.16	87.88	66	forward
CNT30577305	Oryza rufipogon	Oryza barthii	86.62	100.99	97.28	919	forward
CNT30556637	Oryza rufipogon	Panicum hallii	5.84	28.31	87.1	62	forward

Expression of CNT30102835

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MMVLCHGSDRCCSSIPATPSIAHRPFTSSACTNHRRFSGSSARPNGSNPLSPGKLYTPI*

>peptide 2 (34 aa)
MHPDSCMQETITTTHTVSLNLITSISLSLLPPIH*

>peptide 3 (84 aa)
MHAGNNYHNTHSKSESHHIHLSLSPPPNSLTSYTCILHKKKKKKQEENIFHRPIIGFTSLNSSSSLRCPGPDEIDHTLSLTASG*

>peptide 4 (37 aa)
MHTPQKKKKETRREHLPSPNHRFHQPELIKLLEMPWP*

Sequence

>CNT30102835
AATCGATACGCAATACTGAATCAATGCGCAAATGAAGCACTTGACAAGCAATTAAGCGTAGTTTATCCACCATAATTAAGATCGAGACCATGAGATAGCT
AGAACACTGCTGCTACCATGAGATAGTTTATCCCCCTGTAGTACTGTACATCAGAAATTCACCACTCAACTCACCCCCTCACCCATGCATCCAGATTCAT
GCATGCAGGAAACAATTACCACAACACACACAGTAAGTCTGAATCTCATCACATCCATCTCTCTCTCTCTCCTCCCCCCAATTCATTAACATCTTATACA
TGCATACTCCACAAAAAAAAAAAAAAGAAACAAGAAGAGAACATCTTCCATCGCCCAATCATCGGTTTCACCAGCCTGAACTCATCAAGCTCCTTGAGAT
GCCCTGGCCCTGATGAAATCGATCACACGCTCAGCCTGACAGCGTCTGGATGATGGTGTTGTGCCACGGGTCAGACAGGTGCTGCAGCAGCATCCCGGCC
ACCCCCAGCATCGCCCACCGCCCGTTCACCAGCTCCGCCTGCACGAACCACCGCAGGTTCTCCGGGTCCTCCGCCAGACCCAACGGGTCGAACCCGTTAT
CGCCTGGCAAGCTGTACACACCCATTTAACTATCGTGTTAGTAGTTTTTTATGATGCTCTCTACTGGTAGTAGAAATATATTTTTTTATGTGTGTGCTCA
CCTGCCGTTGAGGTAGGTGGGAGAAGGGAGGCCGGGGAGCCACTCTCCCTTGGCCTCCGCCCGAACATTACGTCTCGTAGTCGGTGCGCGGGCGAGGCGG
GTGGAGGATTGCCCTAGGAAGGTAGACTTGAGCGACGCCGACGGGCGGAGGGCTGCCACCGGGGCGCGGGCGGTGACGGACGCCATGGCTTAGCTTCCCC
GGCTTAGAGAGGGGAGGAAGCGAAGCGGGTGTAGTCACAAGGGTACGTTTTGGCCGGCACGGAGCAAAGGCGTGGCTTGTATTAAACTGTCCGGGAGTGG
CCGGCGCTGCCAGGTGGCCACGGCGGCGAGGGCGGCGACGGACGGCGGAGATCGGCGGTGG