Detailed information on CNT30681359


BLAST search results

BLAST vs Swiss-Prot:
sp|P10708|CB12_SOLLC, E-value = 2e-83

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695011Triticum urartuOryza sativa27.678.6695.48199forward
CNT30520701Triticum urartuSetaria italica28.7137.7794.69207forward
CNT30436586Triticum urartuAegilops tauschii26.7783.9198.96193forward
CNT30244600Triticum urartuAvena sativa27.8885.5395.52201forward
CNT30657523Triticum urartuTriticum dicoccoides71.4361.0299.81515forward
CNT30370710Triticum urartuOryza glumipatula17.6132.1593.7127forward
CNT3038710Triticum urartuCucumis melo22.7551.5780.49164forward

Expression of CNT30681359

Peptides detected in this lncRNA

>peptide 1 (70 aa)
GIHFLHRLQHQGTSTHPTSMHCSTITYHHPRSTSQERKKSSSTSDLLPRGSTLLGLVANSHRVPYLGAKA*

>peptide 2 (38 aa)
MCSIRVPGRWWRGRGQRGERRGCRWGRCRCTRPGTTRP*

>peptide 3 (67 aa)
MSSTMKRVVVSVKYSCSPAVYHDGVLRMPILVSSSGMKMPAAPSIAHRQCTSSACTFHRKLSGSDPTP

>peptide 4 (56 aa)
RVFIFYIGYNTRVQVHIQQACIAPQLHTIIHGLLPRKEKNQVPPAIFFPVVAHSSD*

>peptide 5 (50 aa)
GYSFFTSATTPGYKYTSNKHALLHNYIPSSTVYFPGKKKIKFHQRSSSPW*

>peptide 6 (41 aa)
MGPVPVYSAWNHAPMTASMARRPFLISLVRSSLSFSGEPVP*

Sequence

>CNT30681359
AGGGTATTCATTTTTTACATCGGCTACAACACCAGGGTACAAGTACACATCCAACAAGCATGCATTGCTCCACAATTACATACCATCATCCACGGTCTAC
TTCCCAGGAAAGAAAAAAATCAAGTTCCACCAGCGATCTTCTTCCCCGTGGTAGCACACTCCTCGGATTAGTTGCTAACTCCCACCGTGTTCCTTACTTG
GGGGCAAAGGCCTAAAACGTAACACCAAAAAGGGTCATACATCAGTACCCAAAAAATCATACATACACACATATATAGTACCAATATAATGTGTAGCATA
CGCGTACCCGGAAGATGGTGGCGTGGCCGGGGTCAGCGAGGTGAGCGAAGAGGTTGTCGATGGGGCCGGTGCCGGTGTACTCGGCCTGGAACCACGCGCC
CATGACGGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGGTGCGCAGCTCCTTGAGCTTCTCGGGCGAGCCGGTGCCGTAGCCGAGCGGGTCAAAC
CACAGACCACCGGGGATGAGCTCCACGATGAAGAGGGTGGTGGTGTCGGTGAAGTACTCCTGCTCCCCGGCGGTGTACCACGACGGTGTGTTGAGGATGC
CGATCTTGGTCAGCAGCTCCGGGATGAAGATGCCCGCCGCGCCCAGCATCGCCCACCGGCAGTGCACCAGCTCCGCCTGCACGTTCCACCGCAAGCTCTC
CGGGTCGGATCCTACACCGCA