Detailed information on CNT30680526


BLAST search results

BLAST vs Swiss-Prot:
sp|P10707|CB2D_SOLLC, E-value = 8e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671443Triticum urartuSetaria viridis33.0925.2494.54183forward
CNT30708754Triticum urartuGlycine max22.2420.7182.93123forward
CNT30288773Triticum urartuTriticum aestivum31.6566.7999.43175forward
CNT30221764Triticum urartuHordeum vulgare28.9356.1498.12160forward
CNT30555842Triticum urartuOryza glaberrima21.1633.7294.87117forward
CNT3013862Triticum urartuZea mays28.0322.2192.26155forward
CNT30126375Triticum urartuCorymbia citriodora24.4141.2883.7135forward
CNT30477381Triticum urartuArabidopsis halleri27.4951.1882.89152forward
CNT30496219Triticum urartuDigitaria exilis21.1651.7793.16117forward
CNT30556737Triticum urartuPanicum hallii19.1722.9994.34106forward

Expression of CNT30680526

Peptides detected in this lncRNA

>peptide 1 (71 aa)
MGSVLTQPGLMMSAQRRPSAQPMRMSSTMKRVVVSVKYSCSPAVYHDGVLRMRPAPSLLHRCARWLCACVV*

>peptide 2 (71 aa)
PEDGGVAGVSEVSEEVVDGAGAGVLGLEPRAHDGEHGEAAVLDLLGAQLLELLGRAGAVAERVKPQTTGVP*

>peptide 3 (32 aa)
PGRWWRGRGQRGERRGCRWGRCRCTRPGTTRP*

>peptide 4 (41 aa)
MGPVPVYSAWNHAPMTASMARRPFLISLVRSSLSFSGEPVP*

>peptide 5 (84 aa)
MCVRLCVPDVGADGVGVDAAGLDDVCPTAALGPADEDELHDEEGGGVGEVLLLPGGVPRRCVEDETSAIVAAPVRSLAVRVRGVR

Sequence

>CNT30680526
CCCGGAAGATGGTGGCGTGGCCGGGGTCAGCGAGGTGAGCGAAGAGGTTGTCGATGGGGCCGGTGCCGGTGTACTCGGCCTGGAACCACGCGCCCATGAC
GGCGAGCATGGCGAGGCGGCCGTTCTTGATCTCCTTGGTGCGCAGCTCCTTGAGCTTCTCGGGCGAGCCGGTGCCGTAGCCGAGCGGGTCAAACCACAGA
CCACCGGGGTACCTTAGGTTTCCAACACGCGGAGACATCACTTGATTAGCCCCATTAGTACAAGGAGAGCCATGCACGTGACAAGTTCGCTGACATATGT
GTGTGCGACTGTGCGTACCCGACGTCGGTGCCGATGGGGTCGGTGTTGACGCAGCCGGGCTTGATGATGTCTGCCCAACGGCGGCCCTCGGCCCAGCCGA
TGAGGATGAGCTCCACGATGAAGAGGGTGGTGGTGTCGGTGAAGTACTCCTGCTCCCCGGCGGTGTACCACGACGGTGTGTTGAGGATGAGACCAGCGCC
ATCGTTGCTGCACCGGTGCGCTCGCTGGCTGTGCGCGTGCGTGGTGTGAGAGT