Detailed information on CNT30404377


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640495Beta vulgarisNymphaea colorata29.5928.6481.9116forward
CNT30165777Beta vulgarisPistacia vera30.8742.0181.82121forward
CNT30172487Beta vulgarisTrifolium pratense34.9542.5582.48137forward
CNT3079894Beta vulgarisBrassica juncea33.4246.9583.97131forward
CNT30479018Beta vulgarisArabidopsis halleri36.7344.5883.33144forward
CNT3024414Beta vulgarisPopulus trichocarpa35.7145.981.43140forward

Expression of CNT30404377

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSMSSQDRFRSLDLHLFQTFLPSMKLKQRENY*

>peptide 2 (33 aa)
TFSISKSNIRRRRSISLIICNNLNSIMLPYSNT*

Sequence

>CNT30404377
AAACGTTCAGTATCAGTAAAAGCAACATAAGACGGCGTCGTTCTATTTCCTTGATCATTTGCAATAATCTCAACTCGATCATGCTGCCATACTCCAACAC
ATGAGTATGTCGTCCCAAGATCGATTCCGATCGCTGGACCTTCACCTTTTCCAGACATTTTTGCCTTCGATGAAACTTAAACAAAGAGAAAACTATTGAG
AAACAAAAATGGAGAAAATTACAGAGAATTTCGAAGTGAATGTGTGTAAATTTTTCGCAGAAGTGTGTATAATGTGATTTGAGGGTAAGAGAAGAGAAAC
GAGGGTTTTTTTATAAGAAGTTGATGTTTGTTTCGAGAAGGTTCTCGTTATTGATTATTGACCGTCAGATCTTGATCTATCGGTTTTTTAAA