Detailed information on CNT30521211


BLAST search results

BLAST vs Swiss-Prot:
sp|O65719|HSP7C_ARATH, E-value = 7e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672564Setaria italicaSetaria viridis59.8530.5498.17164forward
CNT30640495Setaria italicaNymphaea colorata29.219.7591.2580forward
CNT30491218Setaria italicaOlea europaea21.538.5689.8359forward
CNT30172487Setaria italicaTrifolium pratense33.5828.5788.0492forward
CNT3079894Setaria italicaBrassica juncea30.2929.7584.3483forward
CNT30685689Setaria italicaTriticum urartu51.4654.6595.04141forward
CNT30479018Setaria italicaArabidopsis halleri29.224.7783.7580forward
CNT3024414Setaria italicaPopulus trichocarpa20.818.6991.2357forward
CNT30115466Setaria italicaOryza nivara48.1847.6591.67132forward
CNT30112113Setaria italicaFicus carica21.1726.8593.158forward

Expression of CNT30521211

Peptides detected in this lncRNA

>peptide 1 (90 aa)
GGSRRCSPKTVLMGFMATWFLAASPMRRSESVKATYEGVVPRSMPIAGPSPFPAISSSHYRRSRSCSGFARDRRVGKMGRGVAAAGGGLGF

>peptide 2 (89 aa)
GIEEVLTKDGVDGVHGDLVLGGISDEALGIGEGDVRGGGAEVDADRRPVALPRHLFFSLPAVAELQRLCEGPEGGEDGTRSCGGGWRTRV

Sequence

>CNT30521211
GGGGGATCGAGGAGGTGCTCACCAAAGACGGTGTTGATGGGGTTCATGGCGACCTGGTTCTTGGCGGCATCTCCGATGAGGCGCTCGGAATCGGTGAAGG
CGACGTACGAGGGGGTGGTGCCGAGGTCGATGCCGATCGCCGGCCCGTCGCCCTTCCCCGCCATCTCTTCTTCTCACTACCGGCGGTCGCGGAGCTGCAG
CGGCTTTGCGAGGGACCGGAGGGTGGGGAAGATGGGACGCGGAGTTGCGGCGGCGGGTGGAGGACTAGGGTTTC