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Detailed information on CNT30722694


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Triticum speltaOryza sativa9.530.588.5261forward
CNT30674263Triticum speltaSetaria viridis11.6827.378875forward
CNT30521388Triticum speltaSetaria italica23.6824.0594.08152forward
CNT30712600Triticum speltaGlycine max22.1219.0384.51142forward
CNT3042438Triticum speltaPrunus dulcis22.917.8681.63147forward
CNT30397893Triticum speltaTriticum turgidum58.7259.1899.73377forward
CNT30554109Triticum speltaOryza glaberrima32.8742.4593.36211forward
CNT30442853Triticum speltaAegilops tauschii32.2431.9498.55207forward
CNT30256642Triticum speltaAvena sativa19.1623.8889.43123forward
CNT30142178Triticum speltaLolium perenne23.8323.6596.08153forward
CNT30680513Triticum speltaTriticum urartu9.6624.0388.7162forward
CNT30352266Triticum speltaEragrostis tef28.534.5389.07183forward
CNT30595700Triticum speltaOryza meridionalis9.528.590.1661forward
CNT30370544Triticum speltaOryza glumipatula28.9721.9994.09186forward
CNT30154895Triticum speltaPrunus persica22.919.4780.27147forward
CNT30102065Triticum speltaOryza rufipogon33.1835.8692.49213forward
CNT30576737Triticum speltaOryza barthii25.737.9395.15165forward
CNT30583061Triticum speltaEchinochloa crusgalli24.1428.3992.9155forward
CNT30117062Triticum speltaOryza nivara11.8433.0496.0576forward

Expression of CNT30722694

SRR9114152: 41.77 RPKM

Peptides detected in this lncRNA

>peptide 1 (95 aa)
MAGLVVVAGDGGVVVAHVQVPVDDAGEEGADDGAEELGNPVEDAGEDGDLAAEGEAEGDGRVHMAAGDVGADGDRDEQPEPVADRHGDQPGWVKRR

>peptide 2 (52 aa)
MPVRMVIWPPRARPKVTAGFTWPPEMLAPTATATNSPNPWQIATAISPDGSSG

>peptide 3 (34 aa)
GVPNKFDRNESGGMLNDTCTPQKFGQWAWECTKQ*

Sequence

>CNT30722694
GGAGTACCAAACAAATTTGATAGAAACGAAAGTGGAGGTATGTTAAACGACACATGTACACCACAGAAGTTTGGCCAGTGGGCATGGGAATGCACTAAAC
AATGATGCTCTTATTGAATCGCATAAGGAAACTCAACTGAAGAATCTTGAAACCCCAACAACTTCACAACATCCATCACAGTACAGATACAGAAACATGC
ATCATCCAAGTGCCACAGCCTCGCGGGCTTTCGATCGGAACCAAACAACATGACGTTCCTCACATCATCCAGACAATCCTGAGAGTGACCACCACGTACG
CACTTCTTATGTTGCCGAAGACATTATGGAAACCAAAGACCGAATGATCTTCCCATGGCTGGCTTAGTAGTCGTTGCCGGCGACGGCGGTGTGGTCGTCG
CACATGTACAGGTACCGGTAGACGACGCCGGCGAGGAAGGCGCCGACGATGGCGCCGAGGAGCTGGGCAACCCAGTAGAAGATGCCGGTGAGGATGGTGA
TCTGGCCGCCGAGGGCGAGGCCGAAGGTGACGGCAGGGTTCACATGGCCGCCGGAGATGTTGGCGCCGACGGCGACCGCGACGAACAGCCCGAACCCGTG
GCAGATCGCCACGGCGATCAGCCCGGATGGGTCAAGCGGCGC