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Detailed information on CNT30442853


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 3e-61

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Aegilops tauschiiOryza sativa9.4130.588.5261forward
CNT30712600Aegilops tauschiiGlycine max21.9119.0383.8142forward
CNT3042438Aegilops tauschiiPrunus dulcis20.2215.9280.92131forward
CNT30553963Aegilops tauschiiOryza glaberrima40.5937.4192.78263forward
CNT30142178Aegilops tauschiiLolium perenne56.0256.1193.66363forward
CNT30680513Aegilops tauschiiTriticum urartu9.5724.0388.7162forward
CNT30722694Aegilops tauschiiTriticum spelta31.9432.2498.55207forward
CNT30352266Aegilops tauschiiEragrostis tef35.1943.0287.72228forward
CNT30364446Aegilops tauschiiSorghum bicolor14.9739.1188.6697forward
CNT30619906Aegilops tauschiiCajanus cajan7.4121.8293.7548forward
CNT30595700Aegilops tauschiiOryza meridionalis9.4128.590.1661forward
CNT30370544Aegilops tauschiiOryza glumipatula27.6221.1694.41179forward
CNT30704199Aegilops tauschiiPrunus avium20.689.0482.84134forward
CNT30102065Aegilops tauschiiOryza rufipogon34.137.2192.76221forward
CNT30576737Aegilops tauschiiOryza barthii42.963.9193.88278forward
CNT30583061Aegilops tauschiiEchinochloa crusgalli27.4732.692.7178forward
CNT30117062Aegilops tauschiiOryza nivara10.653097.169forward
CNT30113801Aegilops tauschiiFicus carica21.9134.3883.1142forward

Expression of CNT30442853

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLVKSPLATAGPKERAGFMDPPEKGPATRMKAPTMAPRSWATQ*

>peptide 2 (38 aa)
NPTNFTTSHFTDKGTCIIQLQLRSEPNNRMFFTSSRHS*

>peptide 3 (67 aa)
MPVRMVIWPPRARPKVTAGFTWPPEMLAPMATATNSPNPWQIATAISPDGSSGAPPLTLAAIFQLFC*

>peptide 4 (49 aa)
MAAGDVGADGDRDEQPKPVANRHGDQPGWVKRRAAAHLGCNFSTFLLARS

>peptide 5 (78 aa)
TPPTSQHHILQIKEHASSSYSFDLNQTTGCSSHHRDIRETAHHVRTFYVAEGIMDRTTLPMAGLVVVAGDGAVVVAHV*

Sequence

>CNT30442853
AACCCCACCAACTTCACAACATCACATTTTACAGATAAAGGAACATGCATCATCCAGCTACAGCTTCGATCTGAACCAAACAACAGGATGTTCTTCACAT
CATCGAGACATTCGTGAGACTGCCCACCACGTACGCACTTTTTATGTTGCCGAAGGCATTATGGACCGAACGACTCTTCCCATGGCTGGCTTAGTAGTCG
TTGCCGGCGACGGGGCTGTGGTCGTCGCACATGTATAGGTATCGGTAGACGACGCCGGCGAGGCCACCGCCGATGAGCGGGCCGGCCCAGTAGACCCAGA
TGTTGGTGAAGTCGCCGCTGGCAACGGCGGGGCCGAAGGAGCGTGCAGGGTTCATGGACCCGCCGGAGAAGGGGCCGGCCACGAGGATGAAGGCGCCGAC
GATGGCGCCGAGGAGCTGGGCAACCCAGTAGAAGATGCCGGTGAGGATGGTGATCTGGCCGCCGAGGGCGAGGCCGAAGGTGACGGCAGGGTTCACATGG
CCGCCGGAGATGTTGGCGCCGATGGCGACCGCGACGAACAGCCCAAACCCGTGGCAAATCGCCACGGCGATCAGCCCGGATGGGTCAAGCGGCGCGCCGC
CGCTCACCTTGGCTGCAATTTTTCAACTTTTTTGTTAGCACGCAGTCG