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Detailed information on CNT30142178


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 3e-47

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Lolium perenneOryza sativa9.4330.588.5261forward
CNT30673906Lolium perenneSetaria viridis33.3834.2391.67216forward
CNT30521388Lolium perenneSetaria italica33.3834.1891.67216forward
CNT30396950Lolium perenneTriticum turgidum8.9624.7993.158forward
CNT30589276Lolium perenneMusa acuminata22.7251.487.07147forward
CNT30553963Lolium perenneOryza glaberrima40.6537.4194.3263forward
CNT30442853Lolium perenneAegilops tauschii56.1156.0293.66363forward
CNT30254829Lolium perenneAvena sativa76.3569.6887.04494forward
CNT30680513Lolium perenneTriticum urartu9.5824.0388.7162forward
CNT30722694Lolium perenneTriticum spelta23.6523.8396.08153forward
CNT30352266Lolium perenneEragrostis tef20.5625.0990.23133forward
CNT30364446Lolium perenneSorghum bicolor14.9939.1186.697forward
CNT30595700Lolium perenneOryza meridionalis9.4328.590.1661forward
CNT30370544Lolium perenneOryza glumipatula24.1118.4494.23156forward
CNT30101968Lolium perenneOryza rufipogon28.924.6191.98187forward
CNT30576737Lolium perenneOryza barthii41.1161.1594.36266forward
CNT30583061Lolium perenneEchinochloa crusgalli17.6220.8893.86114forward
CNT30117062Lolium perenneOryza nivara11.1331.397.2272forward

Expression of CNT30142178

Peptides detected in this lncRNA

>peptide 1 (31 aa)
NNRNVLIESHKEIRLKNSETPTSSRHPSQYR*

>peptide 2 (29 aa)
MFPIDIMQTKQRSTDCVTGRTHPSVRHLA*

>peptide 3 (43 aa)
MLVKSPLATAGPKERAGFMDPPEKGPATRMTAPTMAPRSWATQ*

>peptide 4 (35 aa)
MTIFTSIRETDTTYARTFLCSRSTLCKPNNDRQTV*

>peptide 5 (37 aa)
MPVRMVIWPPRARPKVTAGLTWPPEMLAPTATATNSPN

Sequence

>CNT30142178
AACAACCGAAATGTTCTTATTGAATCGCATAAGGAAATTCGACTGAAGAATTCTGAAACTCCAACAAGTTCACGACATCCATCACAGTACAGATAGGGAA
CATGCATCATCCACAGCCTCCCAGGGCGTCGATCTGAACCAAACTACATGACGATCTTCACATCCATTCGCGAGACTGACACCACGTACGCGCGCACTTT
TTTATGTTCCCGATCGACATTATGCAAACCAAACAACGATCGACAGACTGTGTGACTGGGCGCACACACCCTTCAGTTCGTCACCTGGCTTAGTAATCGC
TGCTGGAGACGGCCGTGTGGTCGCCGCACATGTACAGGTACCTGTAGACGACGCCGGCGAGGCCACCGCCGATGAGCGGGCCGGCCCAGTAGATCCAGAT
GTTGGTGAAGTCGCCGCTGGCCACGGCGGGGCCGAAGGAGCGAGCAGGGTTCATGGACCCGCCGGAGAAGGGGCCGGCGACGAGGATGACGGCGCCGACG
ATGGCGCCGAGGAGCTGGGCAACCCAGTAGAAGATGCCGGTGAGGATGGTGATCTGGCCGCCGAGGGCGAGGCCGAAGGTGACGGCGGGGTTGACGTGGC
CGCCGGAGATGTTGGCACCGACAGCGACAGCGACGAACAGCCCAAAC