Detailed information on CNT30117062


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673713Oryza nivaraSetaria viridis28.2613.6310065forward
CNT30521445Oryza nivaraSetaria italica28.267.1410065forward
CNT30554065Oryza nivaraOryza glaberrima59.5734.16100137forward
CNT30442853Oryza nivaraAegilops tauschii3010.6597.169forward
CNT30142178Oryza nivaraLolium perenne31.311.1397.2272forward
CNT30722694Oryza nivaraTriticum spelta33.0411.8496.0576forward
CNT30352266Oryza nivaraEragrostis tef40.8717.7492.5594forward
CNT30365926Oryza nivaraSorghum bicolor24.358.3792.8656forward
CNT30370505Oryza nivaraOryza glumipatula59.5725.51100137forward
CNT3022241Oryza nivaraPopulus trichocarpa25.656.0688.1459forward
CNT30102065Oryza nivaraOryza rufipogon31.7412.2998.6373forward
CNT30576737Oryza nivaraOryza barthii31.316.5510072forward
CNT30583094Oryza nivaraEchinochloa crusgalli28.2632.3498.4665forward
CNT30113801Oryza nivaraFicus carica38.2621.3184.0988forward

Expression of CNT30117062

Peptides detected in this lncRNA

>peptide 1 (62 aa)
HAGAELDEDGADDGAEELGDPVEDAGEDGDLALREAALKESSKRPKAMLPDMATTVARAGES*

Sequence

>CNT30117062
CCACGCCGGTGCAGAACTGGACGAGGACGGCGCCGACGATGGCGCCGAGGAGCTGGGCGACCCAGTAGAAGACGCCGGTGAGGATGGTGATCTGGCCTTG
AGGGAGGCCGCGCTGAAGGAGTCATCGAAGCGGCCGAAGGCGATGTTGCCCGACATGGCGACGACGGTGGCGCGCGCGGGGGAGAGCTGAGTGAGCAGAG
GAAGAGGAAGGAGAGGATGTGATATGGGGG