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Detailed information on CNT30397893


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673906Triticum turgidumSetaria viridis30.7731.0695.92196forward
CNT30521445Triticum turgidumSetaria italica31.5522.0696.02201forward
CNT30618329Triticum turgidumSesamum indicum20.0910.3882.03128forward
CNT30589165Triticum turgidumMusa acuminata32.0344.5489.71204forward
CNT30552658Triticum turgidumOryza glaberrima30.9329.2788.32197forward
CNT30443527Triticum turgidumAegilops tauschii31.5536.6898.01201forward
CNT30256642Triticum turgidumAvena sativa35.1643.596.88224forward
CNT30229576Triticum turgidumAnanas comosus25.7523.0385.37164forward
CNT3066802Triticum turgidumLeersia perrieri22.6160.7688.19144forward
CNT30722694Triticum turgidumTriticum spelta59.1858.7299.73377forward
CNT30364799Triticum turgidumSorghum bicolor29.224.4491.4186forward
CNT30596416Triticum turgidumOryza meridionalis19.7827.7596.03126forward
CNT30369235Triticum turgidumOryza glumipatula26.6915.0785.88170forward
CNT30644098Triticum turgidumCannabis sativa23.0852.582.99147forward
CNT30101968Triticum turgidumOryza rufipogon31.5526.4595.02201forward
CNT30576681Triticum turgidumOryza barthii26.0628.5795.18166forward

Expression of CNT30397893

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MAGLVVVAGDGGVVVAHVQMLVKSPLATAGPKERAGFMDPPEKGPATRMLAPTMKPMAIGAMVPRDPFLGSAAVAYTV*

Sequence

>CNT30397893
GAGGTATGTTAAACGACACATGTACACCACAGAAGTTTGGCCAGTGGGCATGGGAATGCACTAAACAATGATGCTCTTATTGAATCGCATAAGGAAACTC
AACTGAAGAATCTTGAAACCCCAACAACTTCACAACATCCATCACAGTACAGATACAGAAACATGCATCATCCAAGTGCCACAGCCTCGCGGGCTTTCGA
TCGGAACCAAACAACATGACGTTCCTCACATCATCCAGACAATCCTGAGAGTGCCACCACGTACGCACTTCTTATGTTGCCGAAGACATTATGGAAACCA
AAGACCGAATGATCTTCCCATGGCTGGCTTAGTAGTCGTTGCCGGCGACGGCGGTGTGGTCGTCGCACATGTACAGATGTTGGTGAAGTCGCCGCTGGCA
ACGGCGGGGCCGAAGGAGCGTGCAGGGTTCATGGACCCGCCGGAGAAGGGGCCGGCGACGAGGATGTTGGCGCCGACGATGAAGCCGATGGCGATTGGAG
CGATGGTGCCGAGGGACCCCTTCTTGGGGTCGGCGGCGGTGGCGTACACGGTGTAGACGAGCCCGAAGGTGACGATGATCTCCATCACGACGCCCTCGAA
GGCGCCCACGCCGGAAAGCCCGTGTGTAGGGGTCGCC