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Detailed information on CNT30256642


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 4e-93

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30521388Avena sativaSetaria italica80.7865.8289.66416forward
CNT30618329Avena sativaSesamum indicum27.7711.682.52143forward
CNT30708652Avena sativaGlycine max12.6220.9793.8565forward
CNT30397893Avena sativaTriticum turgidum43.535.1696.88224forward
CNT30589165Avena sativaMusa acuminata43.348.6991.03223forward
CNT30543529Avena sativaBrassica napus20.9711.3483.33108forward
CNT30239005Avena sativaBrassica oleracea21.3611.0182.73110forward
CNT3066802Avena sativaLeersia perrieri39.8186.586.34205forward
CNT30627409Avena sativaDaucus carota34.5628.3480.34178forward
CNT30722694Avena sativaTriticum spelta23.8819.1689.43123forward
CNT30364799Avena sativaSorghum bicolor35.7324.1889.67184forward
CNT30596416Avena sativaOryza meridionalis24.4727.7596.03126forward
CNT30706772Avena sativaPrunus avium14.9521.9493.5177forward
CNT3022241Avena sativaPopulus trichocarpa25.0513.2682.95129forward
CNT30576681Avena sativaOryza barthii26.9923.9296.4139forward
CNT3063260Avena sativaSelaginella moellendorffii17.0923.4784.0988forward
CNT30114821Avena sativaEutrema salsugineum21.7510.7281.25112forward

Expression of CNT30256642

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MISITTPSRAPKVTAGLTWPPEMLAPMATATKSPNPWQSATATSPEGSSGAPPLTL

>peptide 2 (40 aa)
PLGRRTPFEFVTWLSSRWRRPCGRRTCTGTGRRRRRGHRR*

>peptide 3 (68 aa)
CHWAGAHPLNSSPGLVVAGDGRVVVAHVQVPVDDAGEATADERAGPVDPDVGEVAAGHGGAEGASRVH*

>peptide 4 (59 aa)
MLVKSPLATAGPKERAGFIDPPEKGPATRMLAPTMKPMAMGAMVPRDPFLGSAAVAYTV*

Sequence

>CNT30256642
TGCCACTGGGCAGGCGCACACCCTTTGAATTCGTCACCTGGCTTAGTAGTCGCTGGAGACGGCCGTGTGGTCGTCGCACATGTACAGGTACCGGTAGACG
ACGCCGGCGAGGCCACCGCCGATGAGAGGGCCGGCCCAGTAGATCCAGATGTTGGTGAAGTCGCCGCTGGCCACGGCGGGGCCGAAGGAGCGAGCAGGGT
TCATTGACCCGCCGGAGAAGGGGCCGGCGACGAGGATGTTGGCGCCGACGATGAAGCCGATGGCGATGGGGGCGATGGTGCCGAGGGACCCCTTCTTGGG
GTCGGCGGCGGTGGCGTACACGGTGTAGACCAGGCCGAAGGTGACGATGATCTCCATCACGACGCCCTCCAGAGCGCCGAAGGTGACGGCGGGGTTGACG
TGGCCGCCGGAGATGTTGGCACCGATGGCGACCGCGACGAAGAGCCCGAACCCGTGGCAAAGCGCCACGGCAACCAGCCCGGAAGGATCAAGTGGCGCGC
CGCCGCTCACCTTGG