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Detailed information on CNT3042438


BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 6e-41

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549654Prunus dulcisIpomoea triloba14.5833.3389.17120forward
CNT30382128Prunus dulcisManihot esculenta14.8231.2881.97122forward
CNT30628532Prunus dulcisVigna unguiculata14.4629.3886.55119forward
CNT30712600Prunus dulcisGlycine max18.8320.7889.03155forward
CNT30223457Prunus dulcisHordeum vulgare13.1236.2482.41108forward
CNT30393023Prunus dulcisTriticum turgidum15.3128.8388.1126forward
CNT30568703Prunus dulcisActinidia chinensis26.6113.2280.37219forward
CNT30592382Prunus dulcisMusa acuminata14.9520.6784.55123forward
CNT30552975Prunus dulcisOryza glaberrima14.4620.5289.08119forward
CNT30146554Prunus dulcisMedicago truncatula9.621.2986.0879forward
CNT30442853Prunus dulcisAegilops tauschii15.9220.2280.92131forward
CNT30135940Prunus dulcisLolium perenne15.3123.6886.51126forward
CNT30722694Prunus dulcisTriticum spelta17.8622.981.63147forward
CNT30619906Prunus dulcisCajanus cajan10.2138.1889.2984forward
CNT30154895Prunus dulcisPrunus persica81.1788.4896.86668forward
CNT30706773Prunus dulcisPrunus avium21.6328.7198.31178forward
CNT3057335Prunus dulcisAmborella trichopoda11.9128.1683.6798forward
CNT30576737Prunus dulcisOryza barthii13.3725.2983.64110forward
CNT30176366Prunus dulcisVigna angularis12.2721.0987.13101forward
CNT30113801Prunus dulcisFicus carica19.6839.2391.98162forward

Expression of CNT3042438

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MPRRREILPPTKAPKVTAGLTCPPEMLALTATPTKRPNPWARAAATRPAGVVAAPWVSLAKTKISVEMNSARPALKASGWYASSGRPTAMFRIGIVGG*

>peptide 2 (54 aa)
MVAHKLLHSWLSIVIVFGSGSGSVWCYILKLMTDFEPAVAGCRFVGNLKVERDW*

Sequence

>CNT3042438
CCAGAAAGTGATAAAATTACCTGGTAGTTGGTTGCGAACTTGAGGAGACCGCAGGCGACGGTGGACCCGAGGAGCTGGGCGATCCAATAGAGGATGCCGC
GGAGGAGGGAGATATTGCCGCCGACGAAGGCGCCGAAAGTGACGGCGGGGTTGACGTGTCCGCCGGAGATGTTGGCACTGACGGCGACGCCGACGAAGAG
GCCGAATCCGTGGGCTAGAGCGGCGGCGACGAGGCCTGCTGGCGTGGTCGCGGCCCCGTGGGTGAGCTTGGCGAAGACGAAGATCAGCGTGGAGATGAAC
TCGGCGAGACCCGCCCTCAAGGCGTCCGGGTGGTACGCCTCCTCGGGTCGGCCAACGGCAATGTTCCGGATCGGCATCGTCGGAGGATGATTAAGATCGG
ACGGTGGAGATTCGCTGCAGAATTAAGCTGCGTATGGTCGCTCACAAACTACTTCACTCTTGGCTCAGTATAGTGATAGTGTTTGGTAGTGGCAGTGGTA
GTGTTTGGTGTTATATACTGAAGTTGATGACTGATTTTGAACCGGCTGTAGCCGGTTGCCGGTTCGTAGGGAATTTGAAGGTGGAACGTGATTGGTGAAC
AGCCTGTGAAATAGCGAAATAATTTTTCTTTTTGGGTTGAGGCGTCGACGTATCTCACAGTAATCTCTCGTTTCTGTATCGTTGCTGTTCATACAGCGGA
GCATTGCCGCCCATAAAGGCTTGTGGTAGTGACACGTGTAGATAAGTGACAGGGGACACGTAACGTGCGGATGTTACTGGGTTTTGTCATCTCTGGTTCG
TCTCTAGAAGGATCAAATGGTAG