CANTATAdb - search

Detailed information on CNT30712600

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FY14|TIP1_MEDTR, E-value = 4e-86

BLAST vs NONCODE:
NONGMAT001209, E-value = 1e-122

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30691498	Glycine max	Oryza sativa	8.45	31.5	90.48	63	forward
CNT30549654	Glycine max	Ipomoea triloba	22.79	47.22	90.59	170	forward
CNT3042438	Glycine max	Prunus dulcis	20.78	18.83	89.03	155	forward
CNT30223457	Glycine max	Hordeum vulgare	8.45	21.14	88.89	63	forward
CNT30393023	Glycine max	Triticum turgidum	19.03	32.49	86.62	142	forward
CNT3084527	Glycine max	Vigna radiata	34.32	17.3	88.67	256	forward
CNT30146554	Glycine max	Medicago truncatula	40.75	81.94	82.89	304	forward
CNT30442853	Glycine max	Aegilops tauschii	19.03	21.91	83.8	142	forward
CNT30135940	Glycine max	Lolium perenne	23.86	33.46	84.27	178	forward
CNT30722694	Glycine max	Triticum spelta	19.03	22.12	84.51	142	forward
CNT30361046	Glycine max	Sorghum bicolor	27.35	32.74	82.84	204	forward
CNT30595700	Glycine max	Oryza meridionalis	8.45	29.44	90.48	63	forward
CNT30706772	Glycine max	Prunus avium	24.66	52.42	88.59	184	forward
CNT30102065	Glycine max	Oryza rufipogon	16.89	21.21	86.51	126	forward
CNT30576737	Glycine max	Oryza barthii	16.89	28.97	85.71	126	forward
CNT30113856	Glycine max	Ficus carica	26.27	19.52	90.82	196	forward

Expression of CNT30712600

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MPRRKVMLPPTKAPKVTAGLTWPPEMLAPTETATKRANAWAMEAEMRPAGAMPEPEPANTKMKVEMNSAKAAFNVSG*

>peptide 2 (42 aa)
TAGFMAAPEKAPPNKMLAPTMKPMAMGAIIPKLPFLGSMAVA*

>peptide 3 (94 aa)
HSGVHGRSREGPTQQNVSADNETNGDGSNNSQITLLGVNGSCVDRVHQTEGHHDLQHQGVANSNSSGESECWNSLRCVTPEQTLTISYYSSLIN*

Sequence

>CNT30712600
TCACAGCGGGGTTCATGGCCGCTCCAGAGAAGGCCCCACCCAACAAAATGTTAGCGCCGACAATGAAACCAATGGCGATGGGAGCAATAATTCCCAAATT
ACCCTTCTTGGGGTCAATGGCAGTTGCGTAGACCGTGTACACCAGACCGAAGGTCATCACGATCTCCAACACCAAGGCGTTGCCAACTCCAACTCCAGCG
GAGAGTCCGAATGCTGGAACAGTCTGCGATGCGTAACACCAGAACAAACTCTAACTATTAGTTATTATAGTTCGTTAATTAATTGATTAAAATAAAGATA
GGTAATAACGGTCTTACGGAGGCGGTGACGAAGGCCAGGAGGAGGGAGGCGACGATGGAGCCGAGGAGCTGGGCGATGACGTAGACGATGCCGCGGAGGA
AGGTGATGTTGCCGCCGACGAAGGCGCCGAAGGTGACGGCGGGGTTGACGTGGCCGCCGGAGATGTTGGCGCCGACGGAGACGGCGACGAAGAGGGCGAA
TGCATGGGCGATGGAGGCGGAGATGAGGCCGGCAGGGGCGATGCCGGAGCCTGAGCCGGCGAACACGAAGATGAAGGTTGAGATGAACTCAGCCAAAGCC
GCCTTCAACGTGTCGGGGTGAGTCGCCTCTTCAGGCCTTCCGACGGCGATGTTTCTGATCGGCATCTTCTTCAATTGACGCTGACGATTATGATGAGATC
AAGTGAACACCGATCACTCACTGAAATCACTCTCTGTTTCGCTGTT