Detailed information on CNT30554109


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 3e-62

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30374836Oryza glaberrimaArabidopsis thaliana26.5615.7381.06132forward
CNT30178846Oryza glaberrimaSecale cereale23.9413.3686.55119forward
CNT30722694Oryza glaberrimaTriticum spelta42.4532.8793.36211forward
CNT30352266Oryza glaberrimaEragrostis tef48.4945.4789.63241forward
CNT3022241Oryza glaberrimaPopulus trichocarpa23.3411.9283.62116forward
CNT30321600Oryza glaberrimaAsparagus officinalis12.0729.279060forward
CNT30583061Oryza glaberrimaEchinochloa crusgalli35.4132.2393.75176forward

Expression of CNT30554109

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MVIWPPRARPKVTAGLTWPPEMLAPMATATNSPNPWHTATATSPAGSSGAPPVNLAAIRS*

>peptide 2 (87 aa)
ELDEDGADDGAEELGDPVEDAGEDGDLAAEGEAEGDGRVDVAAGDVGADGHRHEQPEPVAHRHGDQPGRVKRRAAGQLGCNSIVNHN*

>peptide 3 (63 aa)
MRHGAIDLLTVGDGGADAGEDEDEGGDELGDVGLEGGDVARHGDDGGARGGELSEQRKRKERM*

Sequence

>CNT30554109
CAGAACTGGACGAGGACGGCGCCGACGATGGCGCCGAGGAGCTGGGCGACCCAGTAGAAGACGCCGGTGAGGATGGTGATCTGGCCGCCGAGGGCGAGGC
CGAAGGTGACGGCCGGGTTGACGTGGCCGCCGGAGATGTTGGCGCCGATGGCCACCGCCACGAACAGCCCGAACCCGTGGCACACCGCCACGGCGACCAG
CCCGGCCGGGTCAAGCGGCGCGCCGCCGGTCAACTTGGCTGCAATTCGATCGTAAATCACAATTAATCGCACCGTTCATCGTACGTTTGCATGCGCCATG
GTGCCATCGATTTACTCACTGTAGGCGATGGCGGAGCCGACGCCGGCGAAGACGAAGACGAGGGTGGAGATGAACTCGGCGACGTAGGCCTTGAGGGAGG
CGATGTTGCCCGACATGGCGACGACGGTGGCGCGCGCGGGGGAGAGCTGAGTGAGCAGAGGAAGAGGAAGGAGAGGATGTGATATGGGGGGTGGTCA