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Detailed information on CNT30370544


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 1e-50

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Oryza glumipatulaOryza sativa7.2130.590.1661forward
CNT30674263Oryza glumipatulaSetaria viridis21.6366.7992.35183forward
CNT30521388Oryza glumipatulaSetaria italica17.0222.7895.83144forward
CNT30396950Oryza glumipatulaTriticum turgidum6.8624.7991.3858forward
CNT30553963Oryza glumipatulaOryza glaberrima54.4965.5898.92461forward
CNT30442853Oryza glumipatulaAegilops tauschii21.1627.6294.41179forward
CNT30142178Oryza glumipatulaLolium perenne18.4424.1194.23156forward
CNT30680513Oryza glumipatulaTriticum urartu7.3324.0390.3262forward
CNT30722694Oryza glumipatulaTriticum spelta21.9928.9794.09186forward
CNT30352266Oryza glumipatulaEragrostis tef24.4739.0690.82207forward
CNT30596416Oryza glumipatulaOryza meridionalis40.3175.1195.89341forward
CNT30706772Oryza glumipatulaPrunus avium14.334.4784.3121forward
CNT30101968Oryza glumipatulaOryza rufipogon54.1460.2699.34458forward
CNT30576681Oryza glumipatulaOryza barthii49.7672.4698.57421forward
CNT30583061Oryza glumipatulaEchinochloa crusgalli15.8424.5494.78134forward
CNT30113801Oryza glumipatulaFicus carica20.3341.6583.72172forward

Expression of CNT30370544

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVIWPPRARPKVTAGLTWPPEMLAPMATATNSPNPWHTATA

>peptide 2 (44 aa)
MAKWVIRTRCWQRGRGRRTCRRTGRRGRRGRRRRGGRPSRSRCW*

>peptide 3 (36 aa)
RNNFISDFLFARRRQAYFGGYKQTEMTWPESNEISQ*

>peptide 4 (37 aa)
MLVTMISITTPSNAPTPDSPCVGVACKPTATHGGVSE*

Sequence

>CNT30370544
CGGAACAATTTTATTTCTGATTTCCTATTTGCGAGGAGAAGACAAGCTTATTTTGGAGGCTACAAACAAACTGAAATGACATGGCCCGAATCAAATGAAA
TCTCACAATGAAACTCAACAGAAGTGTTCGATCTTAAACATGCATCTCATCCAACTTGCTCCACACTGATCACATTACAAATTAATCAAGAAGAAACTAA
ACATGGATCGATCATCACCCAAGTGTCACATCCTCGCAACAAAAGCCTTCTTCCCCATCTGAACCAAATCAATCCTTCACAACACATCCTCACAAGATTC
TGACGATGGAGTGACCACCATTTTTATGCGTGTTGCCGATGGCGAAATGGGTAATTAGAACTCGCTGCTGGCAACGGGGGCGTGGTCGCCGCACATGTAG
ACGTACCGGTAGACGAGGCCGGCGAGGCCGCCGCCGACGAGGGGGCCGACCCAGTAGATCCAGATGTTGGTGACGATGATCTCCATCACCACGCCCTCGA
ACGCGCCCACGCCGGACAGCCCGTGCGTCGGTGTCGCCTGCAAACCAACGGCCACCCACGGCGGCGTCAGTGAGTGAGTGACGGATCAGGCTGAGAGCTC
AGCTCTGGCGGCGAGGTGCATGCAAGAAAGAAGGCTTACCACGCCGGTGCAGAACTGGACGAGGACGGCGCCGACGATGGCGCCGAGGAGCTGGGCGACC
CAGTAGAAGACGCCGGTGAGGATGGTGATCTGGCCGCCGAGGGCGAGGCCGAAGGTGACGGCCGGGTTGACGTGGCCGCCGGAGATGTTGGCGCCGATGG
CCACCGCCACGAACAGCCCGAACCCGTGGCACACCGCCACGGCGAC