Detailed information on CNT30352266


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 3e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691498Eragrostis tefOryza sativa11.323091.6760forward
CNT30521388Eragrostis tefSetaria italica32.4527.2290.12172forward
CNT30393023Eragrostis tefTriticum turgidum21.5126.0985.96114forward
CNT30586176Eragrostis tefMusa acuminata2017.3884.91106forward
CNT30554109Eragrostis tefOryza glaberrima45.4748.4989.63241forward
CNT30442853Eragrostis tefAegilops tauschii43.0235.1987.72228forward
CNT30142178Eragrostis tefLolium perenne25.0920.5690.23133forward
CNT30680513Eragrostis tefTriticum urartu1020.5488.6853forward
CNT30722694Eragrostis tefTriticum spelta34.5328.589.07183forward
CNT30364747Eragrostis tefSorghum bicolor22.2613.2188.14118forward
CNT30619906Eragrostis tefCajanus cajan14.1534.0989.3375forward
CNT30595700Eragrostis tefOryza meridionalis11.3228.0491.6760forward
CNT30370544Eragrostis tefOryza glumipatula39.0624.4790.82207forward
CNT30706772Eragrostis tefPrunus avium14.1521.3785.3375forward
CNT3022241Eragrostis tefPopulus trichocarpa21.8911.9283.62116forward
CNT30102065Eragrostis tefOryza rufipogon42.0837.5490.13223forward
CNT30576737Eragrostis tefOryza barthii32.834091.95174forward
CNT30583061Eragrostis tefEchinochloa crusgalli33.2132.2387.5176forward
CNT30117062Eragrostis tefOryza nivara17.7440.8792.5594forward
CNT30113801Eragrostis tefFicus carica29.8138.2681.01158forward

Expression of CNT30352266

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MVICPPRARPKVTAGFTCPPEMLAPMATATKRANPWHTATAIRPDASRGAPPVSLAAMIN*

>peptide 2 (89 aa)
RGRHARAVLDQHGADDGAQELGDPVEEAGEDGDLPAQGQAEGHRRVHVPAGDVGADGHRDEEGEPVAHRHRDQARRVQRRAAGQLGCND*

>peptide 3 (29 aa)
SGSPRPCSTGPARRRRWRPGAGRSSRRGR*

Sequence

>CNT30352266
GTCGGGGTCGCCACGCCCGTGCAGTACTGGACCAGCACGGCGCCGACGATGGCGCCCAGGAGCTGGGCGATCCAGTAGAAGAGGCCGGTGAGGATGGTGA
TCTGCCCGCCCAGGGCCAGGCCGAAGGTCACCGCCGGGTTCACGTGCCCGCCGGAGATGTTGGCGCCGATGGCCACCGCGACGAAGAGGGCGAACCCGTG
GCACACCGCCACCGCGATCAGGCCCGACGCGTCCAGAGGCGCGCCGCCGGTCAGCTTGGCTGCAATGATTAATTGATCAGTTCGATCGATCTTCAGAAAA
GCGATGGCGGACCCGACGCCGGCGAAGACAAAGACGAGGGTGGAGATGAACTCGGCGACATAGGCCTTGAGGGAGGCCGCGCTGAAGGACTCGTCGAACC
GGCCAAAGGCGAGGTTGCCCGACATGGTGGCTGTTCGAGGCAGTGAGTGACTCAGGGAGGTCGGAGGAGATGTAATAATGGGTGTCACTCACTGAAAATA
CGGATCAAGGACCGAGCGAATGTCCCGTTC