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Detailed information on CNT30583061


BLAST search results

BLAST vs Swiss-Prot:
sp|Q5Z6F0|TIP22_ORYSJ, E-value = 3e-33

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674263Echinochloa crusgalliSetaria viridis14.128.198.777forward
CNT30521388Echinochloa crusgalliSetaria italica31.527.2294.77172forward
CNT30554109Echinochloa crusgalliOryza glaberrima32.2335.4193.75176forward
CNT30442853Echinochloa crusgalliAegilops tauschii32.627.4792.7178forward
CNT30254829Echinochloa crusgalliAvena sativa26.0120.0388.73142forward
CNT30142178Echinochloa crusgalliLolium perenne20.8817.6293.86114forward
CNT30722694Echinochloa crusgalliTriticum spelta28.3924.1492.9155forward
CNT30352266Echinochloa crusgalliEragrostis tef32.2333.2187.5176forward
CNT30370544Echinochloa crusgalliOryza glumipatula24.5415.8494.78134forward
CNT30102065Echinochloa crusgalliOryza rufipogon32.2329.6393.75176forward
CNT30576737Echinochloa crusgalliOryza barthii23.2629.294.49127forward

Expression of CNT30583061

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MPARMVIWPPTARPKVTAGFTWPPEMLAPMATATNSPNPWHTATAIRPAGSRGAPPVNL

>peptide 2 (51 aa)
MSLMTANTRRKQQTTMLATASSIGALRSRCWRRGRGRRTCRCTGRQCRRGW*

Sequence

>CNT30583061
CAGGAATATTGCGAACAGAAGGCACAAACTGAATTAAGTTATTGCAATCGTGCAATAAAGGTCAACCGAAACTGCACTGGCTCATAAACCCCACCAACTT
CACACTCATCACGTTACAAAAAAAAGAGCAAATTGAGAAACATGACCAATCATCATCCAAGCGCACACAGCCTCCGGGGCTTTTGATCCGAACCAAACGA
CATGCTGCGATGATCCTCACAACCTGACATCATGAGCCTGATGACCGCCAACACTAGGAGAAAGCAGCAAACAACAATGCTCGCGACGGCATCCTCGATC
GGGGCGCTTAGAAGTCGCTGCTGGCGACGGGGGCGTGGTCGCCGCACATGTAGATGTACCGGTAGACAATGCCGGCGAGGATGGTGATCTGGCCGCCGAC
GGCGAGGCCGAAGGTGACGGCGGGGTTCACGTGGCCGCCGGAGATGTTGGCGCCGATGGCGACCGCGACGAACAGCCCAAACCCGTGGCACACCGCCACG
GCGATCAGACCGGCCGGGTCAAGAGGGGCGCCGCCGGTCAACTTGG