« Back to Trifolium pratense search


Detailed information on CNT30171622


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30632205Trifolium pratenseVigna unguiculata47.3522.9983.92143forward
CNT3084261Trifolium pratenseVigna radiata79.1478.6282.85239forward
CNT3059713Trifolium pratenseArabidopsis lyrata36.7536.1684.68111forward
CNT30714946Trifolium pratenseMalus domestica golden24.8312.918875reverse complement
CNT30478499Trifolium pratenseArabidopsis halleri46.6945.9383.69141forward

Expression of CNT30171622

Peptides detected in this lncRNA

>peptide 1 (41 aa)
LSWVTSTCNPSGGIKVMEHSFGLSGWSGGCTMLACPLQVES*

Sequence

>CNT30171622
GCTGAGTTGGGTAACTTCAACTTGTAACCCAAGTGGGGGCATTAAGGTGATGGAACACAGCTTTGGCTTGTCAGGTTGGTCTGGAGGGTGCACCATGTTG
GCCTGCCCACTCCAAGTTGAGAGTTGAGTCATGGGACTTGAGCGAAGGTTCAGGTCTCCTGCCTCTTAGACCGGAGGACACTGCGTTAGGCTGGTTTCAC
AGAGCAGCGAACACCTCCTTCTCTTAACAGTGGAGGGATCACAGGCCACAGCATTCCCGGTCCAAAATGCTTGGTGAGCCAAGCCATTGAACCATCATTT
TT