Detailed information on CNT30339265


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522415Eragrostis tefSetaria italica90.9486.8792.44291reverse complement
CNT30379183Eragrostis tefManihot esculenta24.3827.4689.7478forward
CNT30566738Eragrostis tefActinidia chinensis25.9423.1289.1683reverse complement
CNT30445279Eragrostis tefSaccharum spontaneum88.4448.4690.46283forward
CNT3015222Eragrostis tefZea mays88.4495.6186.57283reverse complement
CNT30714946Eragrostis tefMalus domestica golden28.4415.6687.9191forward
CNT30361740Eragrostis tefSorghum bicolor88.7593.1186.27284reverse complement
CNT30150266Eragrostis tefBrachypodium distachyon27.8129.1893.2689reverse complement

Expression of CNT30339265

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MVVCQRGRLGLSGPAVQRPVILPPLEAGGNRCSVKPASRIARRSRC*

>peptide 2 (37 aa)
GKQKISKKDGGLPKRAPGPKRACGAAARYPSTVGSGR*

Sequence

>CNT30339265
GTGGCAAACAAAAAATAAGTAAAAAAGATGGTGGTCTGCCAAAGAGGGCGCCTGGGCCTAAGCGGGCCTGCGGTGCAGCGGCCCGTTATCCTTCCACCGT
TGGAAGCGGGCGGTAATCGCTGCTCTGTGAAGCCAGCCTCACGCATTGCCCGCCGCTCTAGGTGCTGAGACGCCAAGGCCTTCGCCAAAGCGTCCGCAGC
CCACTACGCAACTTGGAACGGGCGGGCCGCAGAGTGCAGCCACAGACCCAGGCCCAAGCGCCACACATGGCATCCGCACCACCTTAATGCCCCCGCTCGG
GTTACAAGCTGGCGCTGCTC