Detailed information on CNT30263689


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700605Brassica rapaQuercus lobata23.4514.3488.8972reverse complement
CNT30727469Brassica rapaCorchorus capsularis29.6429.9389.0191forward
CNT30507383Brassica rapaNicotiana attenuata24.124.2686.4974forward
CNT30541125Brassica rapaBrassica napus10010097.39307forward
CNT30237965Brassica rapaBrassica oleracea10010096.42307forward
CNT3059672Brassica rapaArabidopsis lyrata100.33100.3384.74308forward
CNT3076575Brassica rapaBrassica juncea10097.7799.02307forward
CNT30130300Brassica rapaLolium perenne21.522.8489.3966reverse complement
CNT30232760Brassica rapaAnanas comosus21.514.4790.9166forward
CNT30714946Brassica rapaMalus domestica golden28.6615.1589.7788reverse complement
CNT3050857Brassica rapaCucumis sativus25.0825.1690.9177forward

Expression of CNT30263689

Peptides detected in this lncRNA

>peptide 1 (62 aa)
SSLVTRACNPSGDDKVMGHWADLFGPDSERLSTGLPVPSRELNVRTRAKACGSDTLRAEETA*

>peptide 2 (47 aa)
MFGLERRLVVRTLLERRRLREAGFTEQRPPPAFDGGRITGRCLPSPL*

Sequence

>CNT30263689
GTCGAGCTTGGTAACGCGGGCTTGTAATCCAAGTGGAGACGATAAGGTGATGGGACATTGGGCCGATCTCTTTGGGCCGGACTCGGAAAGGCTATCTACT
GGCCTGCCCGTTCCAAGTCGGGAGTTGAATGTTCGGACTCGAGCGAAGGCTTGTGGTTCGGACACTCTTAGAGCGGAGGAGACTGCGTGAGGCTGGTTTC
ACAGAGCAGCGTCCACCTCCCGCTTTCGACGGTGGAAGGATTACGGGCCGGTGCCTCCCGAGCCCACTATGACCCAATAAGCCGGCTCCAATTGGACCAT
CTCTTTT