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Detailed information on CNT3076575


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30316252Brassica junceaCorylus avellana22.9320.3490.2872reverse complement
CNT30700605Brassica junceaQuercus lobata22.9314.3488.8972reverse complement
CNT30373911Brassica junceaArabidopsis thaliana87.5891.9784275reverse complement
CNT30616204Brassica junceaSesamum indicum25.1618.9487.3479forward
CNT30727469Brassica junceaCorchorus capsularis28.9829.9389.0191forward
CNT30507383Brassica junceaNicotiana attenuata23.5724.2686.4974forward
CNT3044357Brassica junceaPrunus dulcis28.6629.6186.6790forward
CNT30561829Brassica junceaActinidia chinensis22.6119.8991.5571forward
CNT30587521Brassica junceaMusa acuminata26.4325.3887.9583forward
CNT30541131Brassica junceaBrassica napus98.0910098.05308forward
CNT30237965Brassica junceaBrassica oleracea97.7710096.42307forward
CNT3059672Brassica junceaArabidopsis lyrata98.09100.3384.74308forward
CNT30263689Brassica junceaBrassica rapa97.7710099.02307forward
CNT30130300Brassica junceaLolium perenne21.0222.8489.3966reverse complement
CNT30232760Brassica junceaAnanas comosus21.0214.4790.9166forward
CNT30652801Brassica junceaRosa chinensis29.9430.7286.1794forward
CNT30128358Brassica junceaCorymbia citriodora30.2534.4284.2195reverse complement
CNT30714946Brassica junceaMalus domestica golden28.0315.1589.7788reverse complement
CNT30478499Brassica junceaArabidopsis halleri98.09100.3385.71308forward
CNT30361740Brassica junceaSorghum bicolor21.3421.9788.0667forward
CNT30410045Brassica junceaPapaver somniferum25.1626.6987.3479reverse complement
CNT30572342Brassica junceaVitis vinifera21.3412.0389.5567reverse complement
CNT3050857Brassica junceaCucumis sativus24.5225.1690.9177forward

Expression of CNT3076575

Peptides detected in this lncRNA

>peptide 1 (62 aa)
SSLVTRACNPSGDDKVMGHWADLFGPDSERLSTGLPVPSRELIVRTRAKACGSDTLRAEETA*

Sequence

>CNT3076575
CGTCGAGCTTGGTAACGCGGGCTTGTAATCCAAGTGGAGACGATAAGGTGATGGGACATTGGGCCGATCTCTTTGGGCCGGACTCGGAAAGGCTATCTAC
TGGCCTGCCCGTTCCAAGTCGGGAGTTGATTGTTCGGACTCGAGCGAAGGCTTGTGGTTCGGACACTCTTAGAGCGGAGGAGACTGCGTGAGGCTGGTTT
CACAGAGCAGCGTCCACCTCCCGCTTTCGACGGTGGAAGGATTACGGGCCGGTGCCTCCCAAGCCCACTATGACCCAATAAGCCGGCTCCAATTGGACCA
TCACTTTTTAAATT