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Detailed information on CNT30522415


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Setaria italicaOryza sativa47.1649.0788.61158reverse complement
CNT30728687Setaria italicaCorchorus capsularis25.0727.7289.2984forward
CNT30185797Setaria italicaSecale cereale20.928.8195.7170forward
CNT30294691Setaria italicaTriticum aestivum20.923.0395.7170forward
CNT30227081Setaria italicaHordeum vulgare20.923.6595.7170forward
CNT30391653Setaria italicaTriticum turgidum20.923.1895.7170forward
CNT30566738Setaria italicaActinidia chinensis24.7823.1290.3683forward
CNT30554032Setaria italicaOryza glaberrima45.6731.9488.24153forward
CNT30443279Setaria italicaAegilops tauschii20.923.0395.7170forward
CNT30669067Setaria italicaTriticum dicoccoides20.923.0395.7170forward
CNT30445279Setaria italicaSaccharum spontaneum88.9651.0390.94298reverse complement
CNT30130300Setaria italicaLolium perenne58.2167.4785.13195reverse complement
CNT3015222Setaria italicaZea mays87.4698.9986.69293forward
CNT30232760Setaria italicaAnanas comosus2014.6991.0467forward
CNT3067608Setaria italicaLeersia perrieri26.2728.5794.3288forward
CNT30714946Setaria italicaMalus domestica golden24.4814.1190.2482reverse complement
CNT30689289Setaria italicaTriticum urartu20.917.1695.7170forward
CNT30339265Setaria italicaEragrostis tef88.3692.592.57296reverse complement
CNT30361740Setaria italicaSorghum bicolor87.4696.0786.69293forward
CNT30596339Setaria italicaOryza meridionalis21.7918.2595.8973reverse complement
CNT30369610Setaria italicaOryza glumipatula46.2737.887.1155reverse complement
CNT30644548Setaria italicaCannabis sativa25.0726.0989.2984forward
CNT30105324Setaria italicaOryza longistaminata45.6747.9688.24153reverse complement
CNT30150512Setaria italicaBrachypodium distachyon26.2728.8592.0588forward
CNT30103689Setaria italicaOryza rufipogon47.1640.5187.97158forward
CNT30576754Setaria italicaOryza barthii45.6740.6987.58153reverse complement
CNT30117631Setaria italicaOryza nivara47.1648.9288.61158forward

Expression of CNT30522415

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MREAGFTEQRIPPASNGGRITGRCASVPLRPMRPLWQTTIFLQFFSFHNLASR

>peptide 2 (53 aa)
LAPACNPSGGIKVVRMPIVALGPGSAAAICGPPVPSCVVGRWVLRRRPWRPGT*

Sequence

>CNT30522415
GCTAGCGCCTGCTTGTAACCCGAGCGGGGGCATTAAGGTGGTGCGGATGCCAATTGTGGCGCTTGGGCCTGGGTCTGCTGCCGCAATCTGCGGCCCGCCC
GTTCCAAGTTGCGTAGTGGGCCGTTGGGTGCTTCGGCGAAGGCCTTGGCGTCCCGGCACCTAGAGCGGCGGGCAATGCGTGAGGCTGGCTTCACAGAGCA
GCGAATACCGCCCGCTTCCAACGGTGGAAGGATAACGGGCCGCTGCGCTTCAGTCCCGCTTAGGCCCATGCGCCCTCTCTGGCAGACCACCATCTTTTTG
CAATTTTTTTCCTTCCACAACCTGGCGTCACGGCC