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Detailed information on CNT30507383


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30373911Nicotiana attenuataArabidopsis thaliana26.8927.4285.3782reverse complement
CNT30158859Nicotiana attenuataPistacia vera28.5230.3186.2187reverse complement
CNT30541131Nicotiana attenuataBrassica napus24.2624.0386.4974forward
CNT30236855Nicotiana attenuataBrassica oleracea24.2623.9586.4974forward
CNT3076575Nicotiana attenuataBrassica juncea24.2623.5786.4974forward
CNT30263689Nicotiana attenuataBrassica rapa24.2624.186.4974forward
CNT30714946Nicotiana attenuataMalus domestica golden23.9312.5687.6773reverse complement
CNT3026785Nicotiana attenuataPopulus trichocarpa30.4930.6988.1793forward
CNT30724927Nicotiana attenuataLupinus angustifolius20.9821.0587.564forward

Expression of CNT30507383

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLGCFRRLGFGWLMSGLPCPSMELSHVAQT*

>peptide 2 (30 aa)
PSLVTWACDPSGGNSVVGCWVVSEGWASGG*

Sequence

>CNT30507383
GCCGAGCCTTGTAACGTGGGCTTGTGACCCAAGTGGGGGCAATAGTGTGGTGGGATGTTGGGTTGTTTCCGAAGGCTGGGCTTCGGGTGGCTAATGTCTG
GCCTGCCGTGTCCAAGCATGGAGTTGAGTCATGTGGCCCAAACGTAAGTATGGGCTGCTTGGCTCCTAGAGTGGGGCGGACTGCGTGAGGCTGGTTTCAC
AGAGCAACGAACAGCTCCCGCTCCGTGCAGTGGAAGGATTACGGGCCGGTGCTCTCCAAGTCCAACAAAAACCTAATGGGCTTCTCCAATTAAACCACCA
CTTTT