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Detailed information on CNT3015222


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696704Zea maysOryza sativa29.7327.3392.0588reverse complement
CNT30522415Zea maysSetaria italica98.9987.4686.69293forward
CNT30518096Zea maysJuglans regia23.6520.2988.5770reverse complement
CNT30727290Zea maysCorchorus capsularis29.7328.8587.588forward
CNT30561830Zea maysActinidia chinensis24.6623.9390.4173reverse complement
CNT30554032Zea maysOryza glaberrima27.717.1292.6882forward
CNT30445279Zea maysSaccharum spontaneum99.6650.5188.81295reverse complement
CNT3067608Zea maysLeersia perrieri30.4129.2292.2290forward
CNT30648233Zea maysRosa chinensis26.6925.7387.3479forward
CNT30714946Zea maysMalus domestica golden27.3613.9490.1281reverse complement
CNT30689289Zea maysTriticum urartu25.3418.3890.6775forward
CNT30339265Zea maysEragrostis tef95.6188.4486.57283reverse complement
CNT30596339Zea maysOryza meridionalis23.9917.7594.3771reverse complement
CNT30369610Zea maysOryza glumipatula27.72091.4682reverse complement
CNT30644641Zea maysCannabis sativa27.722.0487.882forward
CNT30103689Zea maysOryza rufipogon29.7322.5693.1888forward
CNT30575771Zea maysOryza barthii28.0413.7492.7783forward
CNT30117631Zea maysOryza nivara29.7327.2492.0588forward

Expression of CNT3015222

Peptides detected in this lncRNA

>peptide 1 (37 aa)
LASACNPSGGNKVVWMPIVALGPGPGTAICGPPVPSW*

>peptide 2 (49 aa)
MASQPLERRAMREAGFTEQRIPSASNGGRITGHCTPGPPRLKHSFWQTTI

Sequence

>CNT3015222
AGCTAGCGTCTGCTTGTAACCCGAGCGGGGGCAATAAAGTGGTGTGGATGCCAATTGTGGCGCTTGGACCCGGGCCTGGTACTGCAATCTGCGGCCCGCC
CGTTCCAAGTTGGTAGTTGGGTTGTGACCGCTTTGGCGAAGGCCATGGCGTCCCAACCTCTAGAGCGGCGGGCAATGCGTGAGGCTGGTTTCACAGAGCA
GCGAATACCATCCGCTTCCAACGGTGGAAGGATAACGGGCCACTGCACTCCAGGCCCACCTAGGCTCAAGCACTCTTTCTGGCAGACCACCATTTT