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Detailed information on CNT30382680


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30547369Manihot esculentaIpomoea triloba23.769.6988.8972forward
CNT30377398Manihot esculentaArabidopsis thaliana20.1316.5395.0861forward
CNT30526005Manihot esculentaPhaseolus vulgaris48.8448.8486.49148forward
CNT30561830Manihot esculentaActinidia chinensis25.7425.5788.4678reverse complement
CNT3087060Manihot esculentaVigna radiata49.1749.3483.22149forward
CNT30544156Manihot esculentaBrassica napus22.7722.7791.369forward
CNT30235645Manihot esculentaBrassica oleracea23.4323.1391.5571forward
CNT30509042Manihot esculentaSolanum lycopersicum36.6336.2782.88111forward
CNT30145967Manihot esculentaMedicago truncatula47.8549.3282.07145forward
CNT30261535Manihot esculentaBrassica rapa22.7722.789.8669forward
CNT30232760Manihot esculentaAnanas comosus21.7814.4787.8866forward
CNT30714946Manihot esculentaMalus domestica golden21.7811.3690.9166reverse complement
CNT30478989Manihot esculentaArabidopsis halleri20.1319.9398.3661forward
CNT3056201Manihot esculentaAmborella trichopoda21.1220.8595.3164forward

Expression of CNT30382680

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MREAGFTEQRLPLALSSGRITGQCHPGPYG*

>peptide 2 (38 aa)
MAGSGLANFWLARSKLRVKPWDLGEGLGLLVSRGEGNA*

>peptide 3 (30 aa)
PSSVTWACNPSGGSKVLERCSSTYGRIRLG*

Sequence

>CNT30382680
GCCGAGCTCAGTAACGTGGGCTTGTAACCCAAGTGGGGGCTCTAAGGTGTTGGAACGTTGCTCGAGCACATATGGCAGGATCAGGCTTGGCTAATTTCTG
GCTTGCCCGTTCCAAGCTGAGAGTTAAACCATGGGACCTGGGCGAAGGCTTGGGTCTCCTAGTTTCTAGAGGAGAGGGTAATGCGTGAGGCTGGCTTCAC
AGAGCAGCGACTACCTCTCGCTCTCAGCAGTGGAAGGATAACAGGTCAGTGTCATCCTGGTCCATATGGCTAGATGGGCTGTGCTAACTGGACCATTACT
TTT