« Back to Brassica oleracea search


Detailed information on CNT30236855


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700605Brassica oleraceaQuercus lobata23.314.3488.8972reverse complement
CNT30727469Brassica oleraceaCorchorus capsularis29.4529.9389.0191forward
CNT30507383Brassica oleraceaNicotiana attenuata23.9524.2686.4974forward
CNT3044357Brassica oleraceaPrunus dulcis29.1329.6186.6790forward
CNT30543703Brassica oleraceaBrassica napus95.4796.0996.27295forward
CNT30262446Brassica oleraceaBrassica rapa88.3590.795.97273forward
CNT30130300Brassica oleraceaLolium perenne21.3622.8489.3966reverse complement
CNT30232760Brassica oleraceaAnanas comosus21.3614.4790.9166forward
CNT30714946Brassica oleraceaMalus domestica golden28.4815.1589.7788reverse complement
CNT3050857Brassica oleraceaCucumis sativus24.9225.1690.9177forward

Expression of CNT30236855

Peptides detected in this lncRNA

>peptide 1 (62 aa)
SSLVTWACDPSGDNKMLESWADLIRPGLGWLFTGLPIPSRELRVRARAKACGSDTLRAEETA*

Sequence

>CNT30236855
GTCGAGCTTGGTAACGTGGGCTTGTGATCCAAGTGGAGACAACAAGATGTTGGAATCTTGGGCCGATCTCATTAGGCCGGGTTTGGGGTGGCTATTTACT
GGCCTGCCCATTCCAAGTCGGGAGTTGAGGGTTAGGGCTCGAGCGAAGGCTTGTGGTTCGGACACTCTTAGAGCGGAGGAGACTGCGTGAGGCTGGTTTC
ACAGAGCAGCGTCCACCTCCCGCTTTCGACGGTGGAAGGATTACGGGCCGGTGCCTTCTGAGCCCACTATGACCTAATAAGCTGGTTTCAACTGGGACCA
ACAATCTTT