Detailed information on CNT3067127


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 4e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692548Leersia perrieriOryza sativa24.7228.1593.09217forward
CNT30671301Leersia perrieriSetaria viridis22.7856.9885.5200forward
CNT30187034Leersia perrieriSecale cereale19.9336.9286.29175forward
CNT30226858Leersia perrieriHordeum vulgare21.366.5589.3187forward
CNT30553070Leersia perrieriOryza glaberrima24.7226.9693.09217forward
CNT30664801Leersia perrieriTriticum dicoccoides8.3123.3287.6773forward
CNT30447788Leersia perrieriSaccharum spontaneum15.0322.7689.39132forward
CNT3016391Leersia perrieriZea mays11.1626.785.7198forward
CNT30685047Leersia perrieriTriticum urartu19.9333.0886.29175reverse complement
CNT30348037Leersia perrieriEragrostis tef25.0644.0986.82220forward
CNT30365845Leersia perrieriSorghum bicolor15.0328.0988.64132forward
CNT30596851Leersia perrieriOryza meridionalis41.5745.6285.75365forward
CNT30369850Leersia perrieriOryza glumipatula24.7226.8993.09217forward
CNT30105270Leersia perrieriOryza longistaminata16.7428.3290.48147forward
CNT30101038Leersia perrieriOryza rufipogon27.2236.5490.79239forward
CNT30575612Leersia perrieriOryza barthii24.7227.4392.63217forward
CNT30583731Leersia perrieriEchinochloa crusgalli28.5939.7284.86251forward
CNT30116248Leersia perrieriOryza nivara28.1327.5794.33247forward

Expression of CNT3067127

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MHMVPLIEIAVELNHALRQGEEMHIYIMHAGNK*

>peptide 2 (34 aa)
MLEINKSGRASLIHQKKLASWGTGSRRGRGGRSS*

>peptide 3 (56 aa)
PSISLQDQTYEDTDNIFNYLKGTNKIQYILHTSILIDSRSEWDRDQTVTYTQYGIM*

>peptide 4 (42 aa)
MFRASSAAQICSFFAAIDRMLPSILALLDQRLEGAVCFASLGW

>peptide 5 (86 aa)
MGRLRLMPRMLALMAVQRQTAASRSTSPPSSGQHCSLSGTPIFSFSRFSTLAHTLSFSASIGHDPPDGVGTTGAGGGTTGGVGVGQ*

Sequence

>CNT3067127
GCCCAGTATTTCATTGCAAGACCAAACATATGAAGATACGGACAATATATTTAATTATTTGAAAGGAACAAACAAGATACAATATATACTCCATACGAGC
ATATTGATAGATAGTAGAAGCGAATGGGATCGAGATCAGACAGTAACGTACACTCAGTACGGTATTATGTAGTATAAGGCGAGGAAAAGCACTCCAGCAC
TAATTGAACACGCTTGCACACAGTAACACACGTACGTATATAGCATGCATATGGTGCCGCTGATCGAGATAGCCGTGGAGCTCAATCATGCATTAAGGCA
GGGGGAGGAGATGCATATTTATATTATGCATGCTGGAAATAAATAAATCGGGTAGGGCTAGCTTAATCCATCAGAAGAAGCTAGCTAGTTGGGGCACTGG
AAGCCGGAGGGGACGCGGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTTGATGCCGAGGATGTTGGCCTTGATGGCGGTGC
AGAGGCAGACGGCGGCGTCCAGGTCGACGAGTCCACCCAGCAGCGGGCAGCACTGCTCACTCTCCGGCACCCCGATCTTCAGTTTCAGCAGGTTCAGCAC
GTTGGCGCACACGCTCAGCTTCAGCGCGTCGATCGGGCACGATCCCCCCGACGGCGTCGGCACCACCGGCGCCGGCGGTGGCACCACCGGCGGGGTCGGC
GTCGGGCAGTAGGGCTGGCACGCCTGCACGGCTGCCATCTGCAGGACCATGTTCAGGGCAAGCAGCGCCGCACAAATCTGCAGCTTCTTCGCGGCCATCG
ATCGTATGCTACCTAGTATCTTAGCTCTGCTCGATCAGAGGCTAGAAGGTGCTGTTTGCTTTGCTAGCTTGGGATGGT