« Back to Oryza glumipatula search


Detailed information on CNT30369850


BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 2e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692548Oryza glumipatulaOryza sativa95.2999.7498.83769forward
CNT30671301Oryza glumipatulaSetaria viridis24.0455.2786.08194forward
CNT30522474Oryza glumipatulaSetaria italica15.6126.1485.71126forward
CNT30187034Oryza glumipatulaSecale cereale28.2548.187.72228forward
CNT30296862Oryza glumipatulaTriticum aestivum27.1445.9187.21219forward
CNT30553070Oryza glumipatulaOryza glaberrima98.3998.6398.99794forward
CNT3016391Oryza glumipatulaZea mays11.2824.886.8191forward
CNT3067127Oryza glumipatulaLeersia perrieri26.8924.7293.09217forward
CNT30685047Oryza glumipatulaTriticum urartu30.2446.1286.48244reverse complement
CNT30596922Oryza glumipatulaOryza meridionalis64.9359.2193.13524forward
CNT30575612Oryza glumipatulaOryza barthii97.5299.4998.86787forward
CNT30583731Oryza glumipatulaEchinochloa crusgalli16.3620.8987.88132forward

Expression of CNT30369850

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MLMPRTLALMAVQRQTAASRSTRPPSNGQHCSLSGTPIFSFSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

Sequence

>CNT30369850
GCTTAATTTGTTAATGAGCAGATAGATAGATAGCACAAGTAGTACGTACGTACACTGGAGGAAACTTTTATTTGACAGTACGCATTAAAATAACAAGATA
CATATATAGATGATCGATCTGATCATCAATAATCACACTGATAGATCGAGATAAGTATATATGTATGACACAACTGCAACACACAGACTAAGCCATGCAA
AGCTTAAGCCTTAATTAGGTAGCTAGGGTTGTGGTGGTAATGAAGATTAAGAATCAGATGAGTGGGCAGGAGAAGTCGGAAGGGCAGGTCTTGTGGCAGT
AGTTGAGGAGGAGGACGAGGTCGACGGGGACGTTGATGTTGATGCCGAGGACGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCGAGGTCGAC
GAGGCCACCCAGCAACGGGCAGCACTGCTCGCTCTCCGGCACGCCGATCTTCAGCTTCAGCAGGTTGAGCACGTTGGCGCACACGCTCAGCTTCAGCGCG
TCGATCGGGCACTTATTCCCTCCACCCGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTGCACTACTG
CACCCATCTGCATGGTGAAGAGCACATTGAGGGCAAGGAACAGCGCACAAACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGCTAGCTCTACTACT
GCTTAGCAATTAGCTTAATTAGCAGTACTGCCTATAGCTCAGCTCGATCGATCAGAAGAAGAAGCTGGAGCTGCTTTTTGATATTTGCTAGCTCGATCGG
CCGGGAT