CANTATAdb - search

Detailed information on CNT30101038

BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 6e-30

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30671301	Oryza rufipogon	Setaria viridis	16.67	31.05	94.5	109	forward
CNT30187034	Oryza rufipogon	Secale cereale	27.06	37.34	89.83	177	forward
CNT30306637	Oryza rufipogon	Triticum aestivum	31.5	23.82	86.89	206	forward
CNT30226858	Oryza rufipogon	Hordeum vulgare	27.22	63.35	90.45	178	forward
CNT30589645	Oryza rufipogon	Musa acuminata	16.97	20.48	85.59	111	forward
CNT30553292	Oryza rufipogon	Oryza glaberrima	96.94	87.33	94.64	634	forward
CNT3067127	Oryza rufipogon	Leersia perrieri	36.54	27.22	90.79	239	forward
CNT30685047	Oryza rufipogon	Triticum urartu	29.05	35.92	90	190	reverse complement
CNT30348037	Oryza rufipogon	Eragrostis tef	16.97	22.24	90.09	111	forward
CNT30365845	Oryza rufipogon	Sorghum bicolor	32.11	44.68	83.33	210	forward
CNT30596851	Oryza rufipogon	Oryza meridionalis	71.25	58.25	84.55	466	forward
CNT30116248	Oryza rufipogon	Oryza nivara	84.71	61.83	93.68	554	forward

Expression of CNT30101038

Peptides detected in this lncRNA

>peptide 1 (67 aa)
TNDWDRWIEQELASTVCVELTGMQKRRDAVRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

>peptide 2 (62 aa)
MLMPRTLALMAVQRQTAASRSTSPPSSGQHSSLAGTPTLSLSRLSTLAHTPSFSASTGTLMLM

Sequence

>CNT30101038
ACAAACGATTGGGACCGATGGATCGAACAAGAGCTAGCTAGTACAGTATGTGTAGAATTAACAGGCATGCAGAAAAGACGAGATGCAGTACGTACTGATG
CATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCTTTAATTACGTCGTGGAA
CTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTTGAACAAGGAACAAACTA
GACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATGGAGCAGCAGCTATATTAGTTGCTGCACT
GGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGACGAGGTCGACGGGGACGTTGATGTTGATGCCGAGGACGTTGGCCTTGATGGCGGT
GCAGAGGCAGACGGCGGCGTCGAGGTCGACGAGCCCCCCCAGCAGCGGGCAGCACTCCTCGCTCGCCGGCACCCCCACCTTGAGCTTGAGCAGGTTGAGC
ACGTTGGCGCACACGCCCAGCTTCAGCGCGTCGACGGGGACGTTGATGTTGATG