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Detailed information on CNT30187034


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8RW93|LBP65_ARATH, E-value = 4e-13

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692548Secale cerealeOryza sativa48.129.5787.72228forward
CNT30671301Secale cerealeSetaria viridis34.8147.0184.85165forward
CNT30522474Secale cerealeSetaria italica22.1521.7884.76105forward
CNT30392194Secale cerealeTriticum turgidum18.1422.494.1986forward
CNT30553070Secale cerealeOryza glaberrima48.128.3287.72228forward
CNT30248153Secale cerealeAvena sativa24.6817.4985.47117forward
CNT30664801Secale cerealeTriticum dicoccoides14.3521.7392.6568forward
CNT3067127Secale cerealeLeersia perrieri36.9219.9386.29175forward
CNT30685047Secale cerealeTriticum urartu47.6842.7293.81226reverse complement
CNT30348036Secale cerealeEragrostis tef24.2620.5788.7115forward
CNT30596922Secale cerealeOryza meridionalis48.125.7688.16228forward
CNT30369850Secale cerealeOryza glumipatula48.128.2587.72228forward
CNT30101038Secale cerealeOryza rufipogon37.3427.0689.83177forward
CNT30575612Secale cerealeOryza barthii48.128.8287.72228forward
CNT30116276Secale cerealeOryza nivara48.128.0187.28228forward
CNT30593752Secale cerealeEragrostis curvula21.738.6288.35103forward

Expression of CNT30187034

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MDLARAGEVGGAGLAALVEKQHEVDGDVELDAENVGLDGGAEAHGGVEVGEAAQERAALLARRHAEVEL*

>peptide 2 (49 aa)
MPRTLALMAVQRHTAASRSARPLRSGQHCSLAGTPRLSFSRFSTLAHAPS

Sequence

>CNT30187034
GCTAACACAACTTGAACAAACTTTTTATTCCACGTACGTGTACAAGTATGTATACATTTTAACAAATATGCGAATCATCTAGAGACCATAACATACGGGA
TACAATGATCGATGACTAGCTCATACAAAGTCAGTGCAAGAAAGAAAACGTAAGCATGCATGCACGGGTGACGAACCGACGACTACGCCTGCATATATGC
ATGGTTTGTGATATTTAGATCGACGACGTATCCATGGATTTAGCTAGGGCAGGTGAAGTCGGCGGGGCAGGTCTTGCCGCACTGGTTGAGAAGCAGCACG
AGGTCGACGGGGACGTTGAGCTTGATGCCGAGAACGTTGGCCTTGATGGCGGTGCAGAGGCACACGGCGGCGTCGAGGTCGGCGAGGCCGCTCAGGAGCG
GGCAGCACTGCTCGCTCGCCGGCACGCCGAGGTTGAGCTTTAGCAGGTTCAGTACGTTGGCGCACGCGCCCAGC