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Detailed information on CNT30685047


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003354, E-value = 3e-66

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691814Triticum urartuOryza sativa46.1237.288.52244reverse complement
CNT30671301Triticum urartuSetaria viridis37.0555.8484.18196reverse complement
CNT30522474Triticum urartuSetaria italica19.2821.1687.25102reverse complement
CNT30187034Triticum urartuSecale cereale42.7247.6893.81226reverse complement
CNT30296862Triticum urartuTriticum aestivum42.3446.9691.07224reverse complement
CNT30226686Triticum urartuHordeum vulgare50.4751.0587.27267reverse complement
CNT30392194Triticum urartuTriticum turgidum18.7125.7893.9499reverse complement
CNT30589645Triticum urartuMusa acuminata21.7421.2282.61115reverse complement
CNT30553070Triticum urartuOryza glaberrima46.1230.3186.48244reverse complement
CNT30248153Triticum urartuAvena sativa27.4121.6787.59145reverse complement
CNT30664801Triticum urartuTriticum dicoccoides13.0422.0489.8669reverse complement
CNT3016391Triticum urartuZea mays18.1526.1686.4696reverse complement
CNT3067127Triticum urartuLeersia perrieri33.0819.9386.29175reverse complement
CNT30348037Triticum urartuEragrostis tef25.5227.0588.89135reverse complement
CNT30365845Triticum urartuSorghum bicolor25.7128.9485.29136reverse complement
CNT30596926Triticum urartuOryza meridionalis46.1225.687.3244reverse complement
CNT30369850Triticum urartuOryza glumipatula46.1230.2486.48244reverse complement
CNT30101038Triticum urartuOryza rufipogon38.9431.588.83206reverse complement
CNT30575711Triticum urartuOryza barthii46.1233.8488.52244reverse complement
CNT30583731Triticum urartuEchinochloa crusgalli30.4325.4788.2161reverse complement
CNT30116276Triticum urartuOryza nivara46.1229.9888.52244reverse complement
CNT30593752Triticum urartuEragrostis curvula25.5211.385.19135reverse complement

Expression of CNT30685047

Peptides detected in this lncRNA

>peptide 1 (68 aa)
MHVCARACVEFIIMCVFVRARRRAALQRGGANRPSQCQPRRSLCPRRPSQSQPRRRPEEAAAPARSTR*

>peptide 2 (44 aa)
WIHNVATVGIKKVCLGKAILVFFLDACVCACVCRVHHHVCICES*

>peptide 3 (28 aa)
MCPSTSCSSSTSAARPAPPTSPALADPSI

Sequence

>CNT30685047
GCTGGATACACAATGTAGCCACGGTGGGCATCAAGAAAGTTTGTCTTGGCAAAGCCATTTTGGTCTTCTTTCTTGATGCATGTGTGTGCGCGTGCGTGTG
TAGAGTTCATCATCATGTGTGTATTTGTGAGAGCTAGAAGAAGAGCGGCGCTGCAAAGAGGCGGCGCCAACAGGCCGTCCCAGTGCCAACCCCGCCGATC
GCTGTGCCCCCGCCGGCCGTCCCAGTCCCAACCCCGCCGACGACCGGAGGAGGCAGCGGCACCTGCTCGATCAACACGCTGAAGCTGAAGGCGTGCGCCA
ACGTACTGAACCTGCTAAAGCTCAACCTAGGTGTGCCGGCGAGCGAGGACTGCTGCCCGCTGCTGGGCGGGCTCGCCGACCTCGACGCCGCCGTCTGCCT
CTACACCGCCATCAAGGCCAACGTCCTCGGCATCAAGCTCAATGTGCCCGTCGACCTCGTGCTCCTCCTCAACCAGTGCGGCAAGACCTGCCCCGCCGAC
TTCACCTGCCCTAGCTGATCCATCCATCA